I've opened https://github.com/sagemath/sage/issues/38716 to deal with this issue.
On Thursday, September 26, 2024 at 9:10:39 AM UTC+1 Dima Pasechnik wrote: > Hi Anne, > sorry for this mess. > This config.log (which you sent only to me) looks fine, openblas is > detected. What's not fine is > PKG_CONFIG_PATH value, which is over 4K characters long. > That's insanely long, with lots and lots of repeated entries. > It's actually not the only environment variable which grows with each > sourcing. > There are also LIBRARY_PATH, CPATH, PATH, etc (you can read > .homebrew-build-environment for a complete list) > :-( > It could be that's they are so long that it breaks things. > > This came from repeated sourcing of .homebrew-build-env > Our instructions say that "source .homebrew-build-env" should only be > run once in given terminal session. > That's obviously not well-aligned with repeatedly installing more and > more homebrew packages, after which round > values of PKG_CONFIG_PATH might need to be updated, and needs another > round of "source .homebrew-build-env". > > Indeed, PKG_CONFIG_PATH grows after each sourcing, > as you can check by repeatedly running > > source .homebrew-build-env > echo $PKG_CONFIG_PATH > > I'll open a GitHub issue to deal with it. > As a workaround, could you please open a new ternimal, run there > "source .homebrew-build-env" followed by "./configure", and check > that PKG_CONFIG_PATH > is of reasonable length (by running "echo $PKG_CONFIG_PATH"), > something like I see on our M1 machine: > PKG_CONFIG_PATH='/opt/homebrew/opt/sqlite/lib/pkgconfig:/ > opt/homebrew/opt/readline/lib/pkgconfig:/opt/homebrew/opt/ > openssl/lib/pkgconfig:/opt/homebrew/opt/openblas/lib/ > pkgconfig:/opt/homebrew/lib/pkgconfig:' > > Then run "make", if it's OK. > > HTH > Dima > > On Thursday, September 26, 2024 at 12:49:24 AM UTC+1 anne1.s...@gmail.com > wrote: > >> Hi Dima, >> >> Yes, I have openblas installed via brew and just reinstalled it again and >> get the same error message. >> >> Best wishes, >> >> Anne >> >> On Wednesday, September 25, 2024 at 1:41:01 PM UTC-7 dim...@gmail.com >> wrote: >> >>> On Wed, Sep 25, 2024 at 8:18 PM Anne Schilling >>> <anne1.s...@gmail.com> wrote: >>> > Thanks! I followed the instructions, then ran ./configure and make and >>> got the following: >>> >>> Do you have openblas installed via brew? >>> This would be probably the easiest - otherwise we might need an >>> upgrade of openblas >>> (ours it probably too old for macOS 15.0) >>> >>> >>> >>> > >>> > ... >>> > CNAME=\"\" -DNO_AFFINITY -I. -O2 -DMAX_STACK_ALLOC=2048 -Wall >>> -DF_INTERFACE_GFORT -fPIC -DSMP_SERVER -DNO_WARMUP -DMAX_CPU_NUMBER=10 >>> -DMAX_PARALLEL_NUMBER=1 -DUSE_TLS -DBUILD_SINGLE=1 -DBUILD_DOUBLE=1 >>> -DBUILD_COMPLEX=1 -DBUILD_COMPLEX16=1 -DVERSION=\"0.3.26\" -UASMNAME >>> -UASMFNAME -UNAME -UCNAME -UCHAR_NAME -UCHAR_CNAME -DASMNAME=_samax_k >>> -DASMFNAME=_samax_k_ -DNAME=samax_k_ -DCNAME=samax_k >>> -DCHAR_NAME=\"samax_k_\" -DCHAR_CNAME=\"samax_k\" -DNO_AFFINITY -I.. >>> -UDOUBLE -UCOMPLEX -UCOMPLEX -UDOUBLE -DUSE_ABS -UUSE_MIN >>> ../kernel/arm64/amax.S -o samax_k.o >>> > [openblas-0.3.26] [spkg-install] make[6]: *** No rule to make target >>> `../kernel/arm64/amin.S', needed by `samin_k.o'. Stop. >>> > [openblas-0.3.26] [spkg-install] make[5]: *** [libs] Error 1 >>> > [openblas-0.3.26] [spkg-install] >>> ******************************************************************************** >>> >>> >>> > [openblas-0.3.26] [spkg-install] Error building openblas-0.3.26 >>> > [openblas-0.3.26] [spkg-install] >>> ******************************************************************************** >>> >>> >>> > [openblas-0.3.26] >>> ************************************************************************ >>> > [openblas-0.3.26] Error installing package openblas-0.3.26 >>> > [openblas-0.3.26] >>> ************************************************************************ >>> > [openblas-0.3.26] Please email sage-devel ( >>> http://groups.google.com/group/sage-devel) >>> > [openblas-0.3.26] explaining the problem and including the log files >>> > [openblas-0.3.26] /Users/anne/sage/sage/logs/pkgs/openblas-0.3.26.log >>> > [openblas-0.3.26] and >>> > [openblas-0.3.26] /Users/anne/sage/sage/config.log >>> > [openblas-0.3.26] Describe your computer, operating system, etc. >>> > [openblas-0.3.26] If you want to try to fix the problem yourself, >>> *don't* just cd to >>> > [openblas-0.3.26] >>> /Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26 and type >>> 'make' or whatever is appropriate. >>> > [openblas-0.3.26] Instead, the following commands setup all >>> environment variables >>> > [openblas-0.3.26] correctly and load a subshell for you to debug the >>> error: >>> > [openblas-0.3.26] (cd >>> '/Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26' && >>> '/Users/anne/sage/sage/sage' --buildsh) >>> > [openblas-0.3.26] When you are done debugging, you can type "exit" to >>> leave the subshell. >>> > [openblas-0.3.26] >>> ************************************************************************ >>> > [openblas-0.3.26] real 4m31.252s user 3m3.040s sys 1m4.242s >>> > make[4]: *** [openblas-SAGE_LOCAL-no-deps] Error 1 >>> > make[3]: *** >>> [/Users/anne/sage/sage/local/var/lib/sage/installed/openblas-0.3.26] Error >>> 2 >>> > make[2]: *** [all-start] Error 2 >>> > *************************************************************** >>> > Error building Sage. >>> > >>> > The following package(s) may have failed to build (not necessarily >>> > during this run of 'make all-start'): >>> > >>> > * package: m4ri-20200125 >>> > last build time: Sep 25 12:11 >>> > log file: /Users/anne/sage/sage/logs/pkgs/m4ri-20200125.log >>> > build directory: >>> /Users/anne/sage/sage/local/var/tmp/sage/build/m4ri-20200125 >>> > >>> > * package: openblas-0.3.26 >>> > last build time: Sep 25 12:15 >>> > log file: /Users/anne/sage/sage/logs/pkgs/openblas-0.3.26.log >>> > build directory: >>> /Users/anne/sage/sage/local/var/tmp/sage/build/openblas-0.3.26 >>> > >>> > It is safe to delete any log files and build directories, but they >>> > contain information that is helpful for debugging build problems. >>> > WARNING: If you now run 'make' again, the build directory of the >>> > same version of the package will, by default, be deleted. Set the >>> > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. >>> > >>> > real 4m31.928s user 9m1.974s sys 2m44.265s >>> > make[1]: *** [all-start] Error 1 >>> > make: *** [all] Error 2 >>> > >>> > Best wishes, >>> > >>> > Anne >>> > >>> > On Wednesday, September 25, 2024 at 9:33:00 AM UTC-7 dim...@gmail.com >>> wrote: >>> >> >>> >> Well, while in Rome, do as Romans do? :-) >>> >> From your log: >>> >> >>> >> hint: On your system (homebrew), you can install the required system >>> >> packages as follows: >>> >> >>> >> $ brew install autoconf automake libtool pkg-config >>> >> >>> >> On Wed, Sep 25, 2024 at 4:45 PM Anne Schilling >>> >> <anne1.s...@gmail.com> wrote: >>> >> > >>> >> > Hi Dima and Kwankyu, >>> >> > >>> >> > Thank you so much for your help! >>> >> > >>> >> > Dima, I have >>> >> > >>> >> > export PATH=$PATH:/Users/anne/Library/ >>> >> > >>> >> > in my .bashrc file. But when I take out this line the command >>> >> > >>> >> > ./bootstrap >>> >> > >>> >> > gives a failure >>> >> > >>> >> > ... >>> >> > /bootstrap:85: installing src/doc/en/reference/spkg/*.rst >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_environment/src/pyproject.toml >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_environment/src/requirements-editable.txt >>> >>> >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_environment/src/requirements.txt >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_mcqd/src/pyproject.toml >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_mcqd/src/requirements.txt >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_meataxe/src/pyproject.toml >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_meataxe/src/requirements.txt >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_objects/src/pyproject.toml >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_objects/src/requirements-editable.txt >>> >>> >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_objects/src/requirements.txt >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_repl/src/pyproject.toml >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_repl/src/requirements-editable.txt >>> >>> >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_repl/src/requirements.txt >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_sirocco/src/pyproject.toml >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_sirocco/src/requirements.txt >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_tdlib/src/pyproject.toml >>> >> > ./bootstrap: installing >>> /Users/anne/sage/sage/build/pkgs/sagemath_tdlib/src/requirements.txt >>> >> > ./bootstrap-conda:84: generate conda environment files >>> >> > ./bootstrap: line 143: aclocal: command not found >>> >> > Bootstrap failed. Either install autotools; or run bootstrap with >>> >> > the -d option to download the auto-generated files instead. >>> >> > >>> >> > hint: On your system (homebrew), you can install the required >>> system packages as follows: >>> >> > $ brew install autoconf automake libtool pkg-config >>> >> > >>> >> > Homebrew can issue suggestions regarding keg-only packages. >>> >> > The following command is to automatically apply these suggestions >>> >> > for packages relevant for Sage to make them available for the >>> build. >>> >> > Run it once to apply the suggestions for the current session. >>> >> > Add it to your shell profile to apply them for all future sessions. >>> >> > >>> >> > $ source /Users/anne/sage/sage/.homebrew-build-env >>> >> > >>> >> > Best wishes, >>> >> > >>> >> > Anne >>> >> > >>> >> > On Wednesday, September 25, 2024 at 1:00:48 AM UTC-7 >>> dim...@gmail.com wrote: >>> >> >> >>> >> >> these PATH entries look very suspect. >>> >> >> You don't want any of these Python things in your PATH. >>> >> >> >>> >> >> PATH: /Library/Frameworks/Python.framework/Versions/3.7/bin/ >>> >> >> PATH: /Library/Frameworks/Python.framework/Versions/2.7/bin/ >>> >> >> PATH: /Library/Frameworks/Python.framework/Versions/Current/bin/ >>> >> >> >>> >> >> On Tue, Sep 24, 2024 at 11:32 PM Anne Schilling >>> >> >> <anne1.s...@gmail.com> wrote: >>> >> >> > >>> >> >> > Ok, sorry, here is the result after >>> >> >> > >>> >> >> > make distclean >>> >> >> > source .homebrew-build-env >>> >> >> > ./bootstrap >>> >> >> > ./configure --enable-system-site-packages >>> >> >> > >>> >> >> > Best wishes, >>> >> >> > >>> >> >> > Anne >>> >> >> > >>> >> >> > On Tuesday, September 24, 2024 at 3:22:06 PM UTC-7 John H >>> Palmieri wrote: >>> >> >> >> >>> >> >> >> On Tuesday, September 24, 2024 at 3:19:07 PM UTC-7 >>> dim...@gmail.com wrote: >>> >> >> >> >>> >> >> >> From the log: >>> >> >> >> >>> >> >> >> ./configure --enable-system-site-packagesls (SIC!) >>> >> >> >> >>> >> >> >> >>> >> >> >> ## Checking whether SageMath should install SPKG scipy... ## >>> >> >> >> ## ------------------------------------------------------ ## >>> >> >> >> configure:90867: checking whether any of openblas is installed >>> as or >>> >> >> >> will be installed as SPKG >>> >> >> >> configure:90877: result: no >>> >> >> >> configure:90881: checking if --enable-system-site-packages was >>> used >>> >> >> >> configure:90939: result: no; skipping check >>> >> >> >> configure:90976: no suitable system package found for SPKG >>> scipy >>> >> >> >> >>> >> >> >> So please run >>> >> >> >> >>> >> >> >> ./configure --enable-system-site-packages >>> >> >> >> >>> >> >> >> without a typo. >>> >> >> >> >>> >> >> >> >>> >> >> >> And it might not hurt to first run "make distclean" before >>> doing everything else (in case you're not already doing this). >>> >> >> >> >>> >> >> >> -- >>> >> >> >> John >>> >> >> >> >>> >> >> >> >>> >> >> >> >>> >> >> > >>> >> >> > -- >>> >> >> > You received this message because you are subscribed to the >>> Google Groups "sage-devel" group. >>> >> >> > To unsubscribe from this group and stop receiving emails from >>> it, send an email to sage-devel+...@googlegroups.com. >>> >> >> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/51990537-59a2-4fce-9993-b322ada6c10fn%40googlegroups.com. >>> >>> >>> >> > >>> >> > -- >>> >> > You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> >> > To unsubscribe from this group and stop receiving emails from it, >>> send an email to sage-devel+...@googlegroups.com. >>> >> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/da1e14fb-20a7-4e34-bc63-19016b03f588n%40googlegroups.com. >>> >>> >>> > >>> > -- >>> > You received this message because you are subscribed to the Google >>> Groups "sage-devel" group. >>> > To unsubscribe from this group and stop receiving emails from it, send >>> an email to sage-devel+...@googlegroups.com. >>> > To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-devel/fdbca53b-c231-496f-a2d5-36d5062a33ecn%40googlegroups.com. >>> >>> >>> >> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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