I'm guessing your issue is too old m4ri. Try upgrading to libm4ri-dev
from jaunty.
-Tim Abbott
On Wed, 11 Mar 2009, R (Chandra) Chandrasekhar wrote:
>
> Dear Folks,
>
> I am on an AMD64 PC running Kubuntu Intrepid 8.04 and KDE4.2. The Linux
> kernel is 2.6.27-11-generic.
>
> I downloaded the source package sagemath_3.0.5dfsg-2ubuntu1 from the
> jaunty archives and tried compiling it, after having installed other
> necessary packages and built them without incident using prevu.
>
> The build progressed well until I got these messages:
>
> ===
> building 'sage.matrix.matrix_mod2_dense' extension
> gcc -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall
> -Wstrict-prototypes -g -O2 -g -Wall -O2 -fPIC
> -I/var/cache/prevu/src/6184/source/local//include
> -I/var/cache/prevu/src/6184/source/local//include/csage
> -I/var/cache/prevu/src/6184/source/devel//sage/sage/ext -I/usr/include
> -I/usr/include/numpy -I/usr/include/FLINT -I/usr/include/givaro
> -I/usr/include/gsl -I/usr/include/fplll -I/usr/include/eclib
> -I/usr/include/gmp++ -I/usr/include/linbox -I/usr/include/NTL
> -I/usr/include/pari -I/usr/include/qd -I/usr/include/singular
> -I/usr/include/singular/singular -I/usr/include/symmetrica
> -I/usr/include/polybori -I/usr/include/cudd
> -I/usr/include/polybori/groebner -I/usr/include/zn_poly
> -I/usr/include/python2.5 -c sage/matrix/matrix_mod2_dense.c -o
> build/temp.linux-x86_64-2.5/sage/matrix/matrix_mod2_dense.o -w -w
> sage/matrix/matrix_mod2_dense.c: In function
> '__pyx_pf_4sage_6matrix_17matrix_mod2_dense_17Matrix_mod2_dense___init__':
> sage/matrix/matrix_mod2_dense.c:1834: error: 'BIT' undeclared (first use
> in this function)
> sage/matrix/matrix_mod2_dense.c:1834: error: (Each undeclared identifier
> is reported only once
> sage/matrix/matrix_mod2_dense.c:1834: error: for each function it
> appears in.)
> sage/matrix/matrix_mod2_dense.c:1834: error: expected ';' before '__pyx_9'
> sage/matrix/matrix_mod2_dense.c:2041: error: '__pyx_9' undeclared (first
> use in this function)
> sage/matrix/matrix_mod2_dense.c: In function
> '__pyx_f_4sage_6matrix_17matrix_mod2_dense_17Matrix_mod2_dense_set_unsafe':
> sage/matrix/matrix_mod2_dense.c:2159: error: 'BIT' undeclared (first use
> in this function)
> sage/matrix/matrix_mod2_dense.c:2159: error: expected ';' before '__pyx_3'
> sage/matrix/matrix_mod2_dense.c:2173: error: '__pyx_3' undeclared (first
> use in this function)
> sage/matrix/matrix_mod2_dense.c: In function
> '__pyx_f_4sage_6matrix_17matrix_mod2_dense_17Matrix_mod2_dense_get_unsafe':
> sage/matrix/matrix_mod2_dense.c:2198: error: 'BIT' undeclared (first use
> in this function)
> sage/matrix/matrix_mod2_dense.c:2198: error: expected ';' before '__pyx_1'
> sage/matrix/matrix_mod2_dense.c:2207: error: '__pyx_1' undeclared (first
> use in this function)
> sage/matrix/matrix_mod2_dense.c: In function
> '__pyx_pf_4sage_6matrix_17matrix_mod2_dense_17Matrix_mod2_dense__list':
> sage/matrix/matrix_mod2_dense.c:3718: error: 'BIT' undeclared (first use
> in this function)
> sage/matrix/matrix_mod2_dense.c:3718: error: expected ';' before '__pyx_4'
> sage/matrix/matrix_mod2_dense.c:3760: error: '__pyx_4' undeclared (first
> use in this function)
> sage/matrix/matrix_mod2_dense.c: In function
> '__pyx_pf_4sage_6matrix_17matrix_mod2_dense_17Matrix_mod2_dense__pivots':
> sage/matrix/matrix_mod2_dense.c:4312: error: 'BIT' undeclared (first use
> in this function)
> sage/matrix/matrix_mod2_dense.c:4312: error: expected ';' before '__pyx_4'
> sage/matrix/matrix_mod2_dense.c:4399: error: '__pyx_4' undeclared (first
> use in this function)
> sage/matrix/matrix_mod2_dense.c: In function
> '__pyx_pf_4sage_6matrix_17matrix_mod2_dense_17Matrix_mod2_dense_randomize':
> sage/matrix/matrix_mod2_dense.c:4665: error: 'packedmatrix' has no
> member named 'ncols'
> sage/matrix/matrix_mod2_dense.c: In function
> '__pyx_pf_4sage_6matrix_17matrix_mod2_dense_17Matrix_mod2_dense_submatrix':
> sage/matrix/matrix_mod2_dense.c:5887: error: 'packedmatrix' has no
> member named 'ncols'
> sage/matrix/matrix_mod2_dense.c:5900: error: 'packedmatrix' has no
> member named 'ncols'
> sage/matrix/matrix_mod2_dense.c:5923: error: 'packedmatrix' has no
> member named 'nrows'
> sage/matrix/matrix_mod2_dense.c:5936: error: 'packedmatrix' has no
> member named 'nrows'
> error: command 'gcc' failed with exit status 1
> sage: There was an error installing modified sage library code.
>
> ERROR installing SAGE
>
> real 15m0.155s
> user 14m0.613s
> sys 0m36.502s
> sage: An error occurred while installing sage-3.0.5.debian
> Please email sage-devel http://groups.google.com/group/sage-devel
> explaining the problem and send the relevant part of
> of /var/cache/prevu/src/6184/source/install.log. Describe your
> computer, operating system, etc.
> If you want to try to fix the problem, yourself *don't* just cd to
> /var/cache/prevu/src/6184/source/spkg/build/sage-3.0.5.debian and type
> 'make'.
> Instead type "/var/cache/prevu/src/6184/source/sage -sh"
> in order to set all environment variables correctly, then cd to
> /var/cache/prevu/src/6184/source/spkg/build/sage-3.0.5.debian
> (When you are done debugging, you can type "exit" to leave the
> subshell.)
> make[2]: *** [installed/sage-3.0.5.debian] Error 1
> make[2]: Leaving directory `/var/cache/prevu/src/6184/source/spkg'
> Command exited with non-zero status 2
> 1143.37user 64.68system 20:44.06elapsed 97%CPU (0avgtext+0avgdata
> 0maxresident)k
> 32896inputs+1746272outputs (33major+9583683minor)pagefaults 0swaps
> make[1]: Leaving directory `/var/cache/prevu/src/6184/source'
> touch debian/stamp-makefile-build
> DEB_MAKE_CHECK_TARGET unset, not running checks
> fakeroot debian/rules binary
> test -x debian/rules
> dh_testroot
> dh_clean -k
> dh_installdirs -A
> mkdir -p "."
> DEB_MAKE_CHECK_TARGET unset, not running checks
> DEB_MAKE_INSTALL_TARGET unset, skipping default makefile.mk
> common-install target
> dh_installdirs -psagemath
> dh_installdocs -psagemath
> dh_installexamples -psagemath
> dh_installman -psagemath
> dh_installinfo -psagemath
> dh_installmenu -psagemath
> dh_installcron -psagemath
> dh_installinit -psagemath
> dh_installdebconf -psagemath
> dh_installemacsen -psagemath
> dh_installcatalogs -psagemath
> dh_installpam -psagemath
> dh_installlogrotate -psagemath
> dh_installlogcheck -psagemath
> dh_installchangelogs -psagemath
> dh_installudev -psagemath
> dh_lintian -psagemath
> dh_install -psagemath
> dh_link -psagemath /usr/bin/gfortran
> /usr/lib/sagemath/local/bin/sage_fortran.bin
> dh_installmime -psagemath
> rm -rf cython-tmp
> ln -sf /usr/lib/libsingular.so local/lib/
> mkdir -p debian/sagemath/usr/lib/sagemath/
> mv usr/lib/python2.5 debian/sagemath/usr/lib/
> mv: cannot stat `usr/lib/python2.5': No such file or directory
> make: *** [binary-post-install/sagemath] Error 1
> dpkg-buildpackage: failure: fakeroot debian/rules binary gave error exit
> status 2
> Copying back the cached apt archive contents
> -> new cache content libboost-python1.35-dev_1.35.0-8ubuntu1_amd64.deb
> added
> -> new cache content libmpfi0_1.3.4~rc4~cvs20080519-1_amd64.deb added
> -> new cache content r-base-dev_2.7.1-2_all.deb added
> -> new cache content python-matplotlib_0.98.3-4ubuntu1_amd64.deb added
> -> new cache content libmpfi-dev_1.3.4~rc4~cvs20080519-1_amd64.deb added
> -> new cache content zip_2.32-1_amd64.deb added
> -> new cache content libpari-dev_2.3.3-2_amd64.deb added
> -> new cache content unzip_5.52-11ubuntu1_amd64.deb added
> -> new cache content python-tk_2.5.2-1ubuntu1_amd64.deb added
> -> new cache content r-base-core_2.7.1-2_amd64.deb added
> -> new cache content
> libboost-serialization1.35-dev_1.35.0-8ubuntu1_amd64.deb added
> -> new cache content libm4ri0_0.0.20071224-1_amd64.deb added
> -> new cache content blt_2.4z-4ubuntu3_amd64.deb added
> -> new cache content libboost-python1.35.0_1.35.0-8ubuntu1_amd64.deb added
> -> new cache content libecm0_6.2-1_amd64.deb added
> -> new cache content python-numpy_1%3a1.1.1-1_amd64.deb added
> -> new cache content libsymmetrica-dev_2.0-1_amd64.deb added
> -> new cache content python-glade2_2.13.0-0ubuntu8_amd64.deb added
> -> new cache content python-matplotlib-data_0.98.3-4ubuntu1_all.deb added
> -> new cache content
> libboost-serialization1.35.0_1.35.0-8ubuntu1_amd64.deb added
> -> new cache content cython_0.9.6.14-1_all.deb added
> -> new cache content python-gobject_2.15.3-0ubuntu5_amd64.deb added
> -> new cache content libpari2-gmp_2.3.3-2_amd64.deb added
> -> new cache content libpaper-utils_1.1.23+nmu1_amd64.deb added
> -> new cache content python-gtk2_2.13.0-0ubuntu8_amd64.deb added
> -> new cache content libglade2-0_1%3a2.6.3-0ubuntu1_amd64.deb added
> -> new cache content libsymmetrica-2.0_2.0-1_amd64.deb added
> -> new cache content tk8.4_8.4.19-1_amd64.deb added
> -> new cache content python-tz_2008b-3ubuntu1_all.deb added
> -> new cache content tcl8.4_8.4.19-2_amd64.deb added
> -> new cache content libicu38_3.8.1-2_amd64.deb added
> -> new cache content python-numeric_24.2-9_amd64.deb added
> -> new cache content python-pyparsing_1.5.0-1_all.deb added
> -> new cache content libecm-dev_6.2-1_amd64.deb added
> -> new cache content libboost1.35-dev_1.35.0-8ubuntu1_amd64.deb added
> -> new cache content python-cairo_1.4.12-1_amd64.deb added
> -> new cache content libm4ri-dev_0.0.20071224-1_amd64.deb added
> -> new cache content gccxml_0.9.0+cvs20080525-1_amd64.deb added
> -> new cache content libffi5_3.0.5-4_amd64.deb added
> -> new cache content python-dateutil_1.4-1ubuntu2_all.deb added
> -> new cache content python-excelerator_0.6.3a-3_all.deb added
> -> new cache content rsync_3.0.3-2ubuntu1_amd64.deb added
> -> new cache content gfortran_4%3a4.3.1-1ubuntu2_amd64.deb added
> -> new cache content time_1.7-22_amd64.deb added
> -> new cache content gfortran-4.3_4.3.2-1ubuntu12_amd64.deb added
> -> unmounting /var/cache/prevu/src/6184 filesystem
> -> unmounting /var/cache/prevu/intrepid-debs filesystem
> -> unmounting dev/pts filesystem
> -> unmounting proc filesystem
> -> cleaning the build env
> -> removing directory /var/cache/prevu/builds/6261 and its
> subdirectories
> ========================
> Prevu Error: Build failed.
> Prevu encountered an error performing your build. The actual
> error message may be further up in the scrollback before pbuilder
> exited. Please look for a failed dependency or compile error in
> the full output.
> ===
>
> Can someone please take a look and tell me what more I should do to
> build the package successfully from source?
>
> Thanks.
>
> Chandra
>
> >
>
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