Hello Paulo, firstly, I've tried both, Sun from the Partner
repositories and OpenJDK with IcedTea and none of them works.
Currently I'm using Sun's JAVA, that is where I get these exact errors
in the console. I've tried both with Firefox - I've even never heard
of Chromium (only Google Chrome)

Adam Webb, I hope you don't mind that I reply to you in this thread
for not to have two threads concerning the same issue (sorry for
creating it in the first place). You reply is actually very helpful to
me, because that way I have great hopes that I *can* get it to work.
Although I don't see why additional Java stuff would help it (Java
appears to be fully functional and, as mentioned, other applets work
flawlessly), it's a good idea to get me some additional stuff - you
never know. I'll look at the Open-Office suite and what Java it
recomments. Maybe one fixes it.

In the meantime I was hoping that someone could extract some
information from the error. I, for example, am surprised that it
mentions lines

----line 1 command 1 of /home/admin/0/cells/1/sage0-size500.jmol?
1276349004:
          >>>> <!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN">
<<<<

Which are nowhere in either of the files. Besides, the files appear to
be okay. The only difference to the ones on the JMOL wwebpage whose
applets do work is that latter tramsit the data directly in a bz file
whereas SAGE transmits a file to JMOL, telling it where the actual
data can be found, which then is a ZIP file.

On Jun 13, 6:10 pm, Paulo César Pereira de Andrade
<paulo.cesar.pereira.de.andr...@gmail.com> wrote:
> 2010/6/13 ManDay <man...@gmx.net>:
>
> > I too haven't got JMol to work in the NB, although it works fine as
> > the standalone application when run from the commandline. I don't see
> > how the site you mentioned would help. Installing JAVA was no problem
> > and it works just fine, including JMol applets on the jmol.sourceforge
> > site. This is most likely a problem of SAGE.
>
> > I've no ideas how to tackle it. Everything appears to be returned
> > correctly, from what I can tell, meaning that SAGE provides a JMol
> > file which says
>
> > set defaultdirectory "sage0-size500-306189399.jmol.zip"
> > script SCRIPT
>
> > and the according zip-file has the required contents. However, the
> > console gives out an error saying
>
>   Out of curiosity, are you using openjdk with firefox or chromium browser?
>
>   I opened a bug report 
> athttp://icedtea.classpath.org/bugzilla/show_bug.cgi?id=493where I
> describe the procedure I used to make openjdk work with chromium, but
> in sage, jmol for some reason only works with chromium in the
> tutorial. If I create a new worksheet, I get the errors that appear to
> be the same you describe (html contents where a jmol input was
> expected). Also in my case, it appears to be some problem that firefox
> works around, but I still did not stop to debug the data being
> sent/received...

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