Dear Johannes, How did you install? From the PPA? Is this the sagemath-optional trying to build?
Note that this package might be discontinued in future as I see this message: "Installing optional GAP packages, which may not be open source." and free PPAs are only for open source. It's also not well designed, it currently builds packages as root, which is bad practice and dangerous to your system; but that can be fixed. For others: sagemath-optional currently installs these: 0 jan@osprey:~$ls /usr/lib/sagemath/spkg/optional/ biopython-1.60.spkg database_odlyzko_zeta.spkg database_cremona_ellcurve-20120827.spkg database_sloane_oeis-2005-12.spkg database_gap-4.4.12.p1.spkg database_symbolic_data-20070206.spkg database_jones_numfield-v4.spkg dot2tex-2.8.7-2.spkg database_kohel-20060803.spkg gap_packages-4.4.12.p1.spkg Johannes, please list the installed PPA packages: dpkg -l |grep sagemath This package compiled for me on an up-to-date 64bit system. Your sage can work perfectly without sagemath-optional, which is not yet a reliable package. You can remove it with sudo apt-get purge sagemath-optional But if you want to help test, and understand the risks, can you do this sudo apt-get update sudo apt-get dist-upgrade sudo sage -f /usr/lib/sagemath/spkg/optional/gap_packages-4.4.12.p1.spkg Regards, Jan On 18 November 2012 21:04, Johannes <dajo.m...@web.de> wrote: > Hi list, > I tried to upgrade my sage installation, but it fails to build: > > make[1]: Betrete Verzeichnis > '/usr/lib/sagemath/local/lib/pkg/grape/nauty22' > gcc -c -O4 -march=i686 -DBIGNAUTY -o naututilB.o naututil.c > gcc -c -O4 -march=i686 -DBIGNAUTY -o nautyB.o nauty.c > gcc -c -O4 -march=i686 -DBIGNAUTY -o nautilB.o nautil.c > gcc -c -O4 -march=i686 -DBIGNAUTY -o nautinvB.o nautinv.c > gcc -c -O4 -march=i686 -DBIGNAUTY -o naugraphB.o naugraph.c > gcc -c -O4 -march=i686 rng.c > gcc -o dreadnautB -O4 -march=i686 -DBIGNAUTY dreadnaut.c naututilB.o \ > nautyB.o nautilB.o nautinvB.o naugraphB.o rng.o > make[1]: Verlasse Verzeichnis > '/usr/lib/sagemath/local/lib/pkg/grape/nauty22' > ( cd src; make BINDIR="" ) > make[1]: Betrete Verzeichnis '/usr/lib/sagemath/local/lib/pkg/grape/src' > gcc -O -o ../bin//drcanon4 drcanon4.c > gcc -O -o ../bin//drtogap4 drtogap4.c > gcc -O -o ../bin//gap4todr gap4todr.c > make[1]: Verlasse Verzeichnis '/usr/lib/sagemath/local/lib/pkg/grape/src' > cat: ../..//sysinfo.gap: Datei oder Verzeichnis nicht gefunden > ( test -d bin || mkdir bin; \ > test -d bin/ || mkdir bin/; cd bin/; \ > make -f ../../Makefile all2 CC="gcc" CFLAGS="-O2"; \ > cd ../../src/leon/src/../; ./configure; make; mkdir > ../../bin/leon; \ > cp cent ../../bin/leon; cp cjrndper ../../bin/leon; \ > cp commut ../../bin/leon; cp compgrp ../../bin/leon; \ > cp desauto ../../bin/leon; cp fndelt ../../bin/leon; \ > cp generate ../../bin/leon; cp inter ../../bin/leon; \ > cp orbdes ../../bin/leon; cp orblist ../../bin/leon; \ > cp randobj ../../bin/leon; cp setstab ../../bin/leon; \ > cp wtdist ../../bin/leon; cp src/*.sh ../../bin/leon; \ > cp wtdist ../../bin; cp desauto ../../bin; \ > cp wtdist ../../bin/; cp desauto ../../bin/ \ > ) > make[1]: Betrete Verzeichnis '/usr/lib/sagemath/local/lib/pkg/guava/bin' > make[1]: ../../Makefile: Datei oder Verzeichnis nicht gefunden > make[1]: *** Keine Regel, um »../../Makefile« zu erstellen. Schluss. > make[1]: Verlasse Verzeichnis '/usr/lib/sagemath/local/lib/pkg/guava/bin' > /bin/sh: 4: cd: can't cd to ../../src/leon/src/../ > /bin/sh: 4: ./configure: not found > make[1]: Betrete Verzeichnis '/usr/lib/sagemath/local/lib/pkg/guava/bin' > make[1]: *** Keine Targets angegeben und keine »make«-Steuerdatei > gefunden. Schluss. > make[1]: Verlasse Verzeichnis '/usr/lib/sagemath/local/lib/pkg/guava/bin' > mkdir: kann Verzeichnis »../../bin/leon“ nicht anlegen: Datei oder > Verzeichnis nicht gefunden > > my setup: > Ubuntu 12.04 > Linux neo 3.2.0-31-generic #50-Ubuntu SMP Fri Sep 7 16:17:36 UTC 2012 > i686 i686 i386 GNU/Linux > > if you need any more information, just ask, and I'll tell you. > > greatz and thnx, > Johannes > > -- > You received this message because you are subscribed to the Google Groups > "sage-devel" group. > To post to this group, send email to sage-devel@googlegroups.com. > To unsubscribe from this group, send email to > sage-devel+unsubscr...@googlegroups.com. > Visit this group at http://groups.google.com/group/sage-devel?hl=en. > > > -- .~. /V\ Jan Groenewald /( )\ www.aims.ac.za ^^-^^ -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To post to this group, send email to sage-devel@googlegroups.com. To unsubscribe from this group, send email to sage-devel+unsubscr...@googlegroups.com. Visit this group at http://groups.google.com/group/sage-devel?hl=en.
