One more thing: I also replaced each instance of "doctest:858:" with 
"doctest:...".


On Tuesday, May 26, 2015 at 4:31:54 PM UTC-7, David Perkinson wrote:
>
>     EXAMPLES::
>
>       sage: S = sandpiles.Complete(4)
>       sage: D = SandpileDivisor(S, {0: 0, 1: 0, 2: 8, 3: 0})
>       sage: E = SandpileDivisor(S, {0: 2, 1: 2, 2: 2, 3: 2})
>       sage: v = firing_vector(S, D, E)
>         doctest:...: DeprecationWarning: firing_vector() will soon be 
> removed.  Use SandpileDivisor.is_linearly_equivalent() instead.
>         See http://trac.sagemath.org/12345 for details.
>         doctest:1: DeprecationWarning: May 25, 2015: Replaced by 
> SandpileDivisor.is_linearly_equivalent.
>         See http://trac.sagemath.org/12345 for details.
>
> Here is an example of a way I modified an EXAMPLES section.  When I first 
> ran the doctest it gave errors of the form: expect blah1, got blah2.  In 
> each of these cases, I just replaced blah1 by blah2.
>
>
> On Tuesday, May 26, 2015 at 4:21:10 PM UTC-7, John H Palmieri wrote:
>>
>> This message apparently means "Doctest contains explicit source line 
>> number". Can you provide an example of a doctest you changed when adding 
>> the deprecation warnings?
>>
>>   John
>>
>>
>>
>> On Tuesday, May 26, 2015 at 4:11:36 PM UTC-7, David Perkinson wrote:
>>>
>>> Could someone help me with the following error message?  I am making a 
>>> lot of revisions to sandpile.py, and all doctests had passed up until I 
>>> decided to deprecate some functions.  After that, I needed to add the 
>>> deprecation warnings to some Examples sections.  I cleared up all those 
>>> errors and was hoping to get the "All tests passed!" line but got this 
>>> instead:
>>>
>>> =================================
>>>
>>> Doctesting 1 file.
>>> sage -t src/sage/sandpiles/sandpile.py
>>>     Error: Source line number found
>>> ----------------------------------------------------------------------
>>> sage -t src/sage/sandpiles/sandpile.py  # Source line number found
>>> ----------------------------------------------------------------------
>>> Total time for all tests: 30.6 seconds
>>>     cpu time: 0.0 seconds
>>>     cumulative wall time: 0.0 seconds
>>>
>>> =================================
>>>
>>> Thanks,
>>> David
>>>
>>

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