it seems that it's the icedtea who have caused the problem, I tried to 
emerged icedtea-bin and set it to be the system java-vm, and Jmol was 
invoked and behaved as it should be, maybe I should post a bug for icedtea

在 2015年7月14日星期二 UTC+8上午9:39:44,François写道:
>
> What about posting "/root/.sage/temp/rt./12958/tmp_KGOIjb.txt” or its 
> equivalent when run 
> as a normal user? 
>
> I will only be able to test this tomorrow when I get physical access to a 
> machine with sage-on-gentoo. 
>
> François 
>
> > On 14/07/2015, at 13:35, rt. <rtgi...@gmail.com <javascript:>> wrote: 
> > 
> > I just switch to a normal user, it still returns the same error. And 
> before this, I am always using root to do the daily job, and sage works 
> well. 
> > (just for convinience, these days I'm considering rearrange my system, 
> and maybe, a normal user will be applied to do the daily job) 
> > thanks! :) 
> > 
> > 在 2015年7月14日星期二 UTC+8上午9:23:17,François写道: 
> > I think your problem is because you are running sage as root, but from a 
> > normal user session. The big clue is that your $DOT_SAGE folder is 
> > “/root/.sage”. Please try as a normal user. 
> > 
> > François 
> > 
> > > On 14/07/2015, at 13:14, rt. <rtgi...@gmail.com> wrote: 
> > > 
> > > this seems not to be my case, as François said, this problem should 
> have been posted for sage-on-gentoo, while I haven't realized it before. 
> > > Thank you all the same! 
> > > 
> > > 在 2015年7月14日星期二 UTC+8上午1:37:06,Volker Braun写道: 
> > > Confirmed, this is http://trac.sagemath.org/ticket/18891 
> > > 
> > > Run "sage -i jmol" to fix it for now. 
> > > 
> > > 
> > > On Monday, July 13, 2015 at 7:14:03 PM UTC+2, rt. wrote: 
> > > this is a newly built version together with gentoo, while the other 
> functions works well with only 3d plot failed. 
> > > As I excute the following command: 
> > > 
> > > sage: var('x,y') 
> > > sage: plot3d(sin(x*y), (x, -pi, pi), (y, -pi, pi)) 
> > > 
> > > it returns : 
> > > 
> > > 
> /usr/lib64/python2.7/site-packages/sage/repl/rich_output/display_manager.py:561:
>  
> RichReprWarning: Exception in _rich_repr_ while displaying object: Jmol 
> failed to create file '/root/.sage/temp/rt./12958/dir_W9ZHtR/preview.png', 
> see '/root/.sage/temp/rt./12958/tmp_KGOIjb.txt' for details 
> > >   RichReprWarning, 
> > > Graphics3d Object 
> > > 
> > > Not knowing what's going wrong, I have rebuild Jmol, but it changed 
> nothing 
> > > maybe I can find the solution or reason here, and just around these 
> days, thanks to any help very much. 
> > > If needed, more information would be provided (as now I don't know 
> what's neesded. 
> > > 
> > > Thanks very much! 
> > > 
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