I suspect you are hit by http://trac.sagemath.org/19679

Francois

On 12/11/15 09:41, Ian Hoffman wrote:
You were correct, I added the SAGE_ATLAS_ARCH to my environment for the
build. It works better now, but now I get a different failure when
building some of the documentation. Appears to have trouble with an obj
file.

If it help, the only environment I've set is to have it build a dmg file.

Thanks!

Ian



On Wednesday, 9 December 2015 21:25:21 UTC-5, François wrote:

    Works here, and your log definitely indicate ATLAS has been found.
    The error message seem to indicate the wrong options are passed
    to gfortran to link the shared object. This is probably due to some
    confusion in the numpy build system which doesn't expect ATLAS
    on OS X.

    Francois

    On 12/10/15 15:12, François Bissey wrote:
     > Have you set SAGE_ATLAS_ARCH? Doing so is definitely not supported.
     > We prefer using the accelerate framework on OS X.
     > I have just upgraded xcode so I will give it a try.
     >
     > Francois
     >
     > On 12/10/15 13:20, Ian Hoffman wrote:
     >> This is my first post (and first time building Sage). I'm using El
     >> Capitan with the latest versions of Xcode (7.2) and command line
    tools.
     >>
     >> I just tried to build Sage and encountered a problem with numpy
    where
     >> the compiler seems to be looking for some header files and not
    finding
     >> them. I've attached my log file for reference.
     >>
     >> Ian Hoffman
     >>
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