Thanks it worked! I had to run make without sudo as well.
tirsdag 27. desember 2016 11.54.18 UTC+1 skrev Dima Pasechnik følgende: > > > > On Tuesday, December 27, 2016 at 10:34:44 AM UTC, Fjordforsk A/S wrote: >> >> Just tried to do a fresh installation again. I got a different result now. >> >> e/sem/SageMath/sage-7.4/local/var/tmp/sage/build/jmol-14.6.1_2016.07.11.p0 >> [jmol-14.6.1_2016.07.11.p0] Finished installing >> jmol-14.6.1_2016.07.11.p0.spkg >> sage-logger -p 'sage-spkg thebe-9624e0a0' >> '/home/sem/SageMath/sage-7.4/logs/pkgs/thebe-9624e0a0.log' >> [thebe-9624e0a0] mkdir: cannot create directory '/home/sem/.sage': >> Permission denied >> [thebe-9624e0a0] /home/sem/SageMath/sage-7.4/src/bin/sage-env: line 465: >> /home/sem/.sage//R/Makevars.user: Permission denied >> [thebe-9624e0a0] Found local metadata for thebe-9624e0a0 >> [thebe-9624e0a0] Using cached file >> /home/sem/SageMath/sage-7.4/upstream/thebe-9624e0a0.zip >> [thebe-9624e0a0] thebe-9624e0a0 >> [thebe-9624e0a0] ==================================================== >> [thebe-9624e0a0] Setting up build directory for thebe-9624e0a0 >> [thebe-9624e0a0] Finished extraction >> [thebe-9624e0a0] **************************************************** >> [thebe-9624e0a0] Host system: >> [thebe-9624e0a0] Linux Fjordforsk 4.4.0-57-generic #78-Ubuntu SMP Fri Dec >> 9 23:50:32 UTC 2016 x86_64 x86_64 x86_64 GNU/Linux >> [thebe-9624e0a0] **************************************************** >> [thebe-9624e0a0] C compiler: gcc >> [thebe-9624e0a0] C compiler version: >> [thebe-9624e0a0] Using built-in specs. >> [thebe-9624e0a0] COLLECT_GCC=gcc >> [thebe-9624e0a0] >> COLLECT_LTO_WRAPPER=/home/sem/SageMath/sage-7.4/local/libexec/gcc/x86_64-unknown-linux-gnu/4.9.3/lto-wrapper >> [thebe-9624e0a0] Target: x86_64-unknown-linux-gnu >> [thebe-9624e0a0] Configured with: ../src/configure >> --prefix=/home/sem/SageMath/sage-7.4/local >> --with-local-prefix=/home/sem/SageMath/sage-7.4/local >> --with-gmp=/home/sem/SageMath/sage-7.4/local >> --with-mpfr=/home/sem/SageMath/sage-7.4/local >> --with-mpc=/home/sem/SageMath/sage-7.4/local --with-system-zlib >> --disable-multilib --disable-nls --enable-languages=c,c++,fortran >> --disable-libitm >> [thebe-9624e0a0] Thread model: posix >> [thebe-9624e0a0] gcc version 4.9.3 (GCC) >> [thebe-9624e0a0] **************************************************** >> [thebe-9624e0a0] >> [thebe-9624e0a0] real 0m0.010s >> [thebe-9624e0a0] user 0m0.004s >> [thebe-9624e0a0] sys 0m0.000s >> [thebe-9624e0a0] Successfully installed thebe-9624e0a0 >> [thebe-9624e0a0] Deleting temporary build directory >> [thebe-9624e0a0] >> /home/sem/SageMath/sage-7.4/local/var/tmp/sage/build/thebe-9624e0a0 >> [thebe-9624e0a0] Finished installing thebe-9624e0a0.spkg >> cd ../.. && sage-logger -p './sage --docbuild --no-pdf-links all html ' >> logs/dochtml.log >> [dochtml] mkdir: cannot create directory ‘/home/sem/.sage’: Permission >> denied >> [dochtml] /home/sem/SageMath/sage-7.4/src/bin/sage-env: line 465: >> /home/sem/.sage//R/Makevars.user: Permission denied >> [dochtml] Traceback (most recent call last): >> [dochtml] File "/home/sem/SageMath/sage-7.4/local/lib/python/runpy.py", >> line 151, in _run_module_as_main >> [dochtml] mod_name, loader, code, fname = >> _get_module_details(mod_name) >> [dochtml] File "/home/sem/SageMath/sage-7.4/local/lib/python/runpy.py", >> line 109, in _get_module_details >> [dochtml] return _get_module_details(pkg_main_name) >> [dochtml] File "/home/sem/SageMath/sage-7.4/local/lib/python/runpy.py", >> line 101, in _get_module_details >> [dochtml] loader = get_loader(mod_name) >> [dochtml] File >> "/home/sem/SageMath/sage-7.4/local/lib/python/pkgutil.py", line 464, in >> get_loader >> [dochtml] return find_loader(fullname) >> [dochtml] File >> "/home/sem/SageMath/sage-7.4/local/lib/python/pkgutil.py", line 474, in >> find_loader >> [dochtml] for importer in iter_importers(fullname): >> [dochtml] File >> "/home/sem/SageMath/sage-7.4/local/lib/python/pkgutil.py", line 430, in >> iter_importers >> [dochtml] __import__(pkg) >> [dochtml] File >> "/home/sem/SageMath/sage-7.4/local/lib/python2.7/site-packages/sage_setup/docbuild/__init__.py", >> >> line 22, in <module> >> [dochtml] import sage.all >> [dochtml] File >> "/home/sem/SageMath/sage-7.4/local/lib/python2.7/site-packages/sage/all.py", >> line 92, in <module> >> [dochtml] from sage.misc.all import * # takes a while >> [dochtml] File >> "/home/sem/SageMath/sage-7.4/local/lib/python2.7/site-packages/sage/misc/all.py", >> >> line 5, in <module> >> [dochtml] from .misc import (alarm, cancel_alarm, >> [dochtml] File >> "/home/sem/SageMath/sage-7.4/local/lib/python2.7/site-packages/sage/misc/misc.py", >> >> line 189, in <module> >> [dochtml] sage_makedirs(SAGE_DB) >> [dochtml] File >> "/home/sem/SageMath/sage-7.4/local/lib/python2.7/site-packages/sage/misc/misc.py", >> >> line 113, in sage_makedirs >> [dochtml] os.makedirs(dir) >> [dochtml] File "/home/sem/SageMath/sage-7.4/local/lib/python/os.py", >> line 157, in makedirs >> [dochtml] mkdir(name, mode) >> [dochtml] OSError: [Errno 13] Permission denied: '/home/sem/.sage/db' >> Makefile:1054: recipe for target 'doc-html' failed >> make[2]: *** [doc-html] Error 1 >> make[2]: Leaving directory '/home/sem/SageMath/sage-7.4/build/make' >> Makefile:877: recipe for target 'all' failed >> make[1]: *** [all] Error 2 >> make[1]: Leaving directory '/home/sem/SageMath/sage-7.4/build/make' >> >> real 323m42.471s >> user 338m44.856s >> sys 31m40.584s >> *************************************************************** >> Error building Sage. >> >> The following package(s) may have failed to build (not necessarily >> during this run of 'make all'): >> >> The build directory may contain configuration files and other potentially >> helpful information. WARNING: if you now run 'make' again, the build >> directory will, by default, be deleted. Set the environment variable >> SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. >> >> Makefile:16: recipe for target 'all' failed >> make: *** [all] Error 1 >> sem@Fjordforsk:~/SageMath/sage-7.4$ >> >> > Probably the directory /home/sem/.sage/ exists, but was created by root. > Remove it (perhaps using sudo, if needed) then run make again. > (no need to make distclean) > > > >> >> lørdag 24. desember 2016 18.04.17 UTC+1 skrev Eric Gourgoulhon følgende: >>> >>> Le vendredi 23 décembre 2016 15:12:08 UTC+1, Fjordforsk A/S a écrit : >>>> >>>> Hi, installing python-pip did not solve it. >>>> >>>> >>> Have you tried typing >>> make distclean >>> before running make? >>> >>> Eric. >>> >> -- You received this message because you are subscribed to the Google Groups "sage-devel" group. 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