Hi group, Running 'make' of Sage-8.8-Ubuntu_18.04-x86_64.tar.bz2 under Cygwin64 shell (Windows 10), I get the following building error:
[zlib-1.2.11.p0] Building zlib-1.2.11.p0 [zlib-1.2.11.p0] make[3]: Entering directory '/home/SageMath/local/var/tmp/sage/build/zlib-1.2.11.p0/src' [zlib-1.2.11.p0] gcc -O3 -Wall -c -o adler32.o adler32.c [zlib-1.2.11.p0] /home/SageMath/local/bin/gcc: /home/SageMath/local/bin/gcc: cannot execute binary file [zlib-1.2.11.p0] make[3]: *** [Makefile:85: adler32.o] Error 126 [zlib-1.2.11.p0] make[3]: Leaving directory '/home/SageMath/local/var/tmp/sage/build/zlib-1.2.11.p0/src' [zlib-1.2.11.p0] ******************************************************************************** [zlib-1.2.11.p0] Error building zlib-1.2.11.p0 [zlib-1.2.11.p0] ******************************************************************************** [zlib-1.2.11.p0] [zlib-1.2.11.p0] real 0m0.949s [zlib-1.2.11.p0] user 0m0.105s [zlib-1.2.11.p0] sys 0m0.412s [zlib-1.2.11.p0] ************************************************************************ [zlib-1.2.11.p0] Error installing package zlib-1.2.11.p0 [zlib-1.2.11.p0] ************************************************************************ [zlib-1.2.11.p0] Please email sage-devel (http://groups.google.com/group/sage-devel) [zlib-1.2.11.p0] explaining the problem and including the log file [zlib-1.2.11.p0] /home/SageMath/logs/pkgs/zlib-1.2.11.p0.log [zlib-1.2.11.p0] Describe your computer, operating system, etc. [zlib-1.2.11.p0] If you want to try to fix the problem yourself, *don't* just cd to [zlib-1.2.11.p0] /home/SageMath/local/var/tmp/sage/build/zlib-1.2.11.p0 and type 'make' or whatever is appropriate. [zlib-1.2.11.p0] Instead, the following commands setup all environment variables [zlib-1.2.11.p0] correctly and load a subshell for you to debug the error: [zlib-1.2.11.p0] (cd '/home/SageMath/local/var/tmp/sage/build/zlib-1.2.11.p0' && '/home/SageMath/sage' --sh) [zlib-1.2.11.p0] When you are done debugging, you can type "exit" to leave the subshell. [zlib-1.2.11.p0] ************************************************************************ make[2]: *** [Makefile:2163: /home/SageMath/local/var/lib/sage/installed/zlib-1.2.11.p0] Error 1 make[2]: Leaving directory '/home/SageMath/build/make' make[1]: *** [Makefile:1852: base-toolchain] Error 2 make[1]: Leaving directory '/home/SageMath/build/make' real 0m18.784s user 0m1.174s sys 0m3.768s *************************************************************** Error building Sage. The following package(s) may have failed to build (not necessarily during this run of 'make base-toolchain'): * package: zlib-1.2.11.p0 log file: /home/SageMath/logs/pkgs/zlib-1.2.11.p0.log build directory: /home/SageMath/local/var/tmp/sage/build/zlib-1.2.11.p0 The build directory may contain configuration files and other potentially helpful information. WARNING: if you now run 'make' again, the build directory will, by default, be deleted. Set the environment variable SAGE_KEEP_BUILT_SPKGS to 'yes' to prevent this. make: *** [Makefile:33: base-toolchain] Error 1 ##### Environmental variable: echo $SAGE_KEEP_BUILT_SPKGS yes ##### Any help? Thanks a lot, Miguel -- You received this message because you are subscribed to the Google Groups "sage-devel" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-devel+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-devel/586886c6-2437-4d25-a78a-4a8c8b008aa6%40googlegroups.com.
!<symlink>ÿþl o g s / p k g s / c o n f i g . l o g
This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by Sage configure 8.8, which was generated by GNU Autoconf 2.69. Invocation command line was $ ./configure --no-create --no-recursion ## --------- ## ## Platform. ## ## --------- ## hostname = DESKTOP-2G3LEO2 uname -m = x86_64 uname -r = 3.0.5(0.338/5/3) uname -s = CYGWIN_NT-10.0 uname -v = 2019-03-31 11:17 /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/bin PATH: /usr/bin PATH: /cygdrive/c/Program Files (x86)/Intel/iCLS Client PATH: /cygdrive/c/Program Files/Intel/iCLS Client PATH: /cygdrive/c/Windows/system32 PATH: /cygdrive/c/Windows PATH: /cygdrive/c/Windows/System32/Wbem PATH: /cygdrive/c/Windows/System32/WindowsPowerShell/v1.0 PATH: /cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/DAL PATH: /cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/DAL PATH: /cygdrive/c/Program Files (x86)/Intel/Intel(R) Management Engine Components/IPT PATH: /cygdrive/c/Program Files/Intel/Intel(R) Management Engine Components/IPT PATH: /cygdrive/c/Program Files (x86)/NVIDIA Corporation/PhysX/Common PATH: /cygdrive/c/WINDOWS/system32 PATH: /cygdrive/c/WINDOWS PATH: /cygdrive/c/WINDOWS/System32/Wbem PATH: /cygdrive/c/WINDOWS/System32/WindowsPowerShell/v1.0 PATH: /cygdrive/c/WINDOWS/System32/OpenSSH PATH: /cygdrive/c/Program Files/Java/jdk-10.0.2/bin PATH: /cygdrive/c/Program Files/Java/jre-10.0.2/bin PATH: /usr/bin PATH: /RNAview PATH: /RNAview/bin PATH: /RNAview/BASEPARS PATH: /RnamlView_1.0-RnaView PATH: /cygdrive/c/Program Files/Git/cmd PATH: /cygdrive/d PATH: /cygdrive/c/Program Files/Intel/WiFi/bin PATH: /cygdrive/c/Program Files/Common Files/Intel/WirelessCommon PATH: /home/ViennaRNA-2.4.11/bin PATH: /cygdrive/d/home PATH: /cygdrive/c/Program Files/Artifex Software/gsview6.0/bin PATH: /home/ViennaRNA-2.4.11/src/Utils PATH: /usr/bin/X11 PATH: /cygdrive/c/Program Files/dotnet PATH: /cygdrive/c/Program Files (x86)/IncrediBuild PATH: /home/ViennaRNA-2.4.12/src PATH: /cygdrive/c/Users/Miguel/AppData/Local/Microsoft/WindowsApps PATH: /cygdrive/c/Users/Miguel/AppData/Roaming/Dashlane/4.6.7.25343/bin/Firefox_Extension/{442718d9-475e-452a-b3e1-fb1ee16b8e9f}/components PATH: /cygdrive/c/Program Files/Docker Toolbox PATH: /cygdrive/c/Users/Miguel/AppData/Local/Programs/MiKTeX 2.9/miktex/bin/x64 ## ----------- ## ## Core tests. ## ## ----------- ## configure:2750: checking for a BSD-compatible install configure:2818: result: /usr/bin/install -c configure:2829: checking whether build environment is sane configure:2884: result: yes configure:3035: checking for a thread-safe mkdir -p configure:3074: result: /usr/bin/mkdir -p configure:3081: checking for gawk configure:3097: found /usr/bin/gawk configure:3108: result: gawk configure:3119: checking whether make sets $(MAKE) configure:3141: result: yes configure:3170: checking whether make supports nested variables configure:3187: result: yes configure:3316: checking whether to enable maintainer-specific portions of Makefiles configure:3325: result: yes configure:3367: checking for root user configure:3376: result: no configure:3387: checking build system type configure:3401: result: x86_64-unknown-cygwin configure:3421: checking host system type configure:3434: result: x86_64-unknown-cygwin configure:3546: checking for a sed that does not truncate output configure:3610: result: /usr/bin/sed configure:3618: checking for ar configure:3634: found /usr/bin/ar configure:3646: result: yes configure:3667: checking for m4 configure:3683: found /usr/bin/m4 configure:3695: result: yes configure:3770: checking for pkg-config configure:3788: found /usr/bin/pkg-config configure:3800: result: /usr/bin/pkg-config configure:3825: checking pkg-config is at least version 0.9.0 configure:3828: result: yes configure:3839: checking for ranlib configure:3855: found /usr/bin/ranlib configure:3867: result: yes configure:3888: checking for strip configure:3904: found /usr/bin/strip configure:3916: result: yes configure:3936: checking for GNU or BSD tar configure:3984: result: /usr/bin/tar configure:3995: checking for GNU make configure:4037: result: /usr/bin/make configure:4051: checking for latex configure:4067: found /cygdrive/c/Users/Miguel/AppData/Local/Programs/MiKTeX 2.9/miktex/bin/x64/latex configure:4079: result: yes configure:4103: checking for perl configure:4121: found /usr/bin/perl configure:4133: result: /usr/bin/perl configure:4141: checking for Perl version 5.8.0 or later configure:4152: result: yes configure:4214: checking for gcc configure:4230: found /usr/bin/gcc configure:4241: result: gcc configure:4470: checking for C compiler version configure:4479: gcc --version >&5 gcc (GCC) 7.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:4490: $? = 0 configure:4479: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/lto-wrapper.exe Target: x86_64-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-7.4.0-1.x86_64/src/gcc-7.4.0/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-7.4.0-1.x86_64/src/gcc-7.4.0 --prefix=/usr --exec-prefix=/usr --localstatedir=/var --sysconfdir=/etc --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=x86_64-pc-cygwin --host=x86_64-pc-cygwin --target=x86_64-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-tune=generic --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libcilkrts --enable-libgomp --enable-libitm --enable-libquadmath --enable-libquadmath-support --disable-libssp --enable-libada --disable-symvers --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id --with-default-libstdcxx-abi=gcc4-compatible --enable-libstdcxx-filesystem-ts Thread model: posix gcc version 7.4.0 (GCC) configure:4490: $? = 0 configure:4479: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:4490: $? = 1 configure:4479: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:4490: $? = 1 configure:4510: checking whether the C compiler works configure:4532: gcc conftest.c >&5 configure:4536: $? = 0 configure:4584: result: yes configure:4587: checking for C compiler default output file name configure:4589: result: a.exe configure:4595: checking for suffix of executables configure:4602: gcc -o conftest.exe conftest.c >&5 configure:4606: $? = 0 configure:4628: result: .exe configure:4650: checking whether we are cross compiling configure:4658: gcc -o conftest.exe conftest.c >&5 configure:4662: $? = 0 configure:4669: ./conftest.exe configure:4673: $? = 0 configure:4688: result: no configure:4693: checking for suffix of object files configure:4715: gcc -c conftest.c >&5 configure:4719: $? = 0 configure:4740: result: o configure:4744: checking whether we are using the GNU C compiler configure:4763: gcc -c conftest.c >&5 configure:4763: $? = 0 configure:4772: result: yes configure:4781: checking whether gcc accepts -g configure:4801: gcc -c -g conftest.c >&5 configure:4801: $? = 0 configure:4842: result: yes configure:4859: checking for gcc option to accept ISO C89 configure:4922: gcc -c -g -O2 conftest.c >&5 configure:4922: $? = 0 configure:4935: result: none needed configure:4960: checking whether gcc understands -c and -o together configure:4982: gcc -c conftest.c -o conftest2.o configure:4985: $? = 0 configure:4982: gcc -c conftest.c -o conftest2.o configure:4985: $? = 0 configure:4997: result: yes configure:5017: checking whether make supports the include directive configure:5032: make -f confmf.GNU && cat confinc.out make[2]: Entering directory '/home/SageMath' make[2]: Leaving directory '/home/SageMath' this is the am__doit target configure:5035: $? = 0 configure:5054: result: yes (GNU style) configure:5079: checking dependency style of gcc configure:5190: result: none configure:5210: checking how to run the C preprocessor configure:5241: gcc -E conftest.c configure:5241: $? = 0 configure:5255: gcc -E conftest.c conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory #include <ac_nonexistent.h> ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:5255: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | #include <ac_nonexistent.h> configure:5280: result: gcc -E configure:5300: gcc -E conftest.c configure:5300: $? = 0 configure:5314: gcc -E conftest.c conftest.c:11:10: fatal error: ac_nonexistent.h: No such file or directory #include <ac_nonexistent.h> ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:5314: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | #include <ac_nonexistent.h> configure:5400: checking for g++ configure:5416: found /usr/bin/g++ configure:5427: result: g++ configure:5454: checking for C++ compiler version configure:5463: g++ --version >&5 g++ (GCC) 7.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:5474: $? = 0 configure:5463: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/lto-wrapper.exe Target: x86_64-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-7.4.0-1.x86_64/src/gcc-7.4.0/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-7.4.0-1.x86_64/src/gcc-7.4.0 --prefix=/usr --exec-prefix=/usr --localstatedir=/var --sysconfdir=/etc --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=x86_64-pc-cygwin --host=x86_64-pc-cygwin --target=x86_64-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-tune=generic --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libcilkrts --enable-libgomp --enable-libitm --enable-libquadmath --enable-libquadmath-support --disable-libssp --enable-libada --disable-symvers --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id --with-default-libstdcxx-abi=gcc4-compatible --enable-libstdcxx-filesystem-ts Thread model: posix gcc version 7.4.0 (GCC) configure:5474: $? = 0 configure:5463: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:5474: $? = 1 configure:5463: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion'; did you mean '--version'? g++: fatal error: no input files compilation terminated. configure:5474: $? = 1 configure:5478: checking whether we are using the GNU C++ compiler configure:5497: g++ -c conftest.cpp >&5 configure:5497: $? = 0 configure:5506: result: yes configure:5515: checking whether g++ accepts -g configure:5535: g++ -c -g conftest.cpp >&5 configure:5535: $? = 0 configure:5576: result: yes configure:5601: checking dependency style of g++ configure:5712: result: none configure:5780: checking for gfortran configure:5796: found /usr/bin/gfortran configure:5807: result: gfortran configure:5833: checking for Fortran compiler version configure:5842: gfortran --version >&5 GNU Fortran (GCC) 7.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:5853: $? = 0 configure:5842: gfortran -v >&5 Using built-in specs. COLLECT_GCC=gfortran COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/lto-wrapper.exe Target: x86_64-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-7.4.0-1.x86_64/src/gcc-7.4.0/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-7.4.0-1.x86_64/src/gcc-7.4.0 --prefix=/usr --exec-prefix=/usr --localstatedir=/var --sysconfdir=/etc --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=x86_64-pc-cygwin --host=x86_64-pc-cygwin --target=x86_64-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-tune=generic --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libcilkrts --enable-libgomp --enable-libitm --enable-libquadmath --enable-libquadmath-support --disable-libssp --enable-libada --disable-symvers --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id --with-default-libstdcxx-abi=gcc4-compatible --enable-libstdcxx-filesystem-ts Thread model: posix gcc version 7.4.0 (GCC) configure:5853: $? = 0 configure:5842: gfortran -V >&5 gfortran: error: unrecognized command line option '-V' gfortran: fatal error: no input files compilation terminated. configure:5853: $? = 1 configure:5842: gfortran -qversion >&5 gfortran: error: unrecognized command line option '-qversion'; did you mean '--version'? gfortran: fatal error: no input files compilation terminated. configure:5853: $? = 1 configure:5862: checking whether we are using the GNU Fortran compiler configure:5875: gfortran -c conftest.F >&5 configure:5875: $? = 0 configure:5884: result: yes configure:5890: checking whether gfortran accepts -g configure:5901: gfortran -c -g conftest.f >&5 configure:5901: $? = 0 configure:5909: result: yes configure:5999: checking for gcc configure:6015: found /usr/bin/gcc configure:6026: result: gcc configure:6051: checking for Objective C compiler version configure:6060: gcc --version >&5 gcc (GCC) 7.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6071: $? = 0 configure:6060: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/lto-wrapper.exe Target: x86_64-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-7.4.0-1.x86_64/src/gcc-7.4.0/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-7.4.0-1.x86_64/src/gcc-7.4.0 --prefix=/usr --exec-prefix=/usr --localstatedir=/var --sysconfdir=/etc --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=x86_64-pc-cygwin --host=x86_64-pc-cygwin --target=x86_64-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-tune=generic --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libcilkrts --enable-libgomp --enable-libitm --enable-libquadmath --enable-libquadmath-support --disable-libssp --enable-libada --disable-symvers --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id --with-default-libstdcxx-abi=gcc4-compatible --enable-libstdcxx-filesystem-ts Thread model: posix gcc version 7.4.0 (GCC) configure:6071: $? = 0 configure:6060: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:6071: $? = 1 configure:6060: gcc -qversion >&5 gcc: error: unrecognized command line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:6071: $? = 1 configure:6075: checking whether we are using the GNU Objective C compiler configure:6094: gcc -c conftest.m >&5 gcc: error: spawn: No such file or directory configure:6094: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | | int | main () | { | #ifndef __GNUC__ | choke me | #endif | | ; | return 0; | } configure:6103: result: no configure:6112: checking whether gcc accepts -g configure:6132: gcc -c -g conftest.m >&5 gcc: error: spawn: No such file or directory configure:6132: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:6147: gcc -c conftest.m >&5 gcc: error: spawn: No such file or directory configure:6147: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:6163: gcc -c -g conftest.m >&5 gcc: error: spawn: No such file or directory configure:6163: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:6173: result: no configure:6198: checking dependency style of gcc configure:6307: result: none configure:6376: checking for g++ configure:6392: found /usr/bin/g++ configure:6403: result: g++ configure:6428: checking for Objective C++ compiler version configure:6437: g++ --version >&5 g++ (GCC) 7.4.0 Copyright (C) 2017 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6448: $? = 0 configure:6437: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-pc-cygwin/7.4.0/lto-wrapper.exe Target: x86_64-pc-cygwin Configured with: /cygdrive/i/szsz/tmpp/gcc/gcc-7.4.0-1.x86_64/src/gcc-7.4.0/configure --srcdir=/cygdrive/i/szsz/tmpp/gcc/gcc-7.4.0-1.x86_64/src/gcc-7.4.0 --prefix=/usr --exec-prefix=/usr --localstatedir=/var --sysconfdir=/etc --docdir=/usr/share/doc/gcc --htmldir=/usr/share/doc/gcc/html -C --build=x86_64-pc-cygwin --host=x86_64-pc-cygwin --target=x86_64-pc-cygwin --without-libiconv-prefix --without-libintl-prefix --libexecdir=/usr/lib --enable-shared --enable-shared-libgcc --enable-static --enable-version-specific-runtime-libs --enable-bootstrap --enable-__cxa_atexit --with-dwarf2 --with-tune=generic --enable-languages=ada,c,c++,fortran,lto,objc,obj-c++ --enable-graphite --enable-threads=posix --enable-libatomic --enable-libcilkrts --enable-libgomp --enable-libitm --enable-libquadmath --enable-libquadmath-support --disable-libssp --enable-libada --disable-symvers --with-gnu-ld --with-gnu-as --with-cloog-include=/usr/include/cloog-isl --without-libiconv-prefix --without-libintl-prefix --with-system-zlib --enable-linker-build-id --with-default-libstdcxx-abi=gcc4-compatible --enable-libstdcxx-filesystem-ts Thread model: posix gcc version 7.4.0 (GCC) configure:6448: $? = 0 configure:6437: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:6448: $? = 1 configure:6437: g++ -qversion >&5 g++: error: unrecognized command line option '-qversion'; did you mean '--version'? g++: fatal error: no input files compilation terminated. configure:6448: $? = 1 configure:6452: checking whether we are using the GNU Objective C++ compiler configure:6471: g++ -c conftest.mm >&5 g++: error: spawn: No such file or directory configure:6471: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | | int | main () | { | #ifndef __GNUC__ | choke me | #endif | | ; | return 0; | } configure:6480: result: no configure:6489: checking whether g++ accepts -g configure:6509: g++ -c -g conftest.mm >&5 g++: error: spawn: No such file or directory configure:6509: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:6524: g++ -c conftest.mm >&5 g++: error: spawn: No such file or directory configure:6524: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:6540: g++ -c -g conftest.mm >&5 g++: error: spawn: No such file or directory configure:6540: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:6550: result: no configure:6575: checking dependency style of g++ configure:6684: result: none configure:6725: checking how to run the C++ preprocessor configure:6752: g++ -E conftest.cpp configure:6752: $? = 0 configure:6766: g++ -E conftest.cpp conftest.cpp:11:10: fatal error: ac_nonexistent.h: No such file or directory #include <ac_nonexistent.h> ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:6766: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | #include <ac_nonexistent.h> configure:6791: result: g++ -E configure:6811: g++ -E conftest.cpp configure:6811: $? = 0 configure:6825: g++ -E conftest.cpp conftest.cpp:11:10: fatal error: ac_nonexistent.h: No such file or directory #include <ac_nonexistent.h> ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:6825: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | /* end confdefs.h. */ | #include <ac_nonexistent.h> configure:6854: checking for grep that handles long lines and -e configure:6912: result: /usr/bin/grep configure:6917: checking for egrep configure:6979: result: /usr/bin/grep -E configure:6984: checking for ANSI C header files configure:7004: g++ -c -g -O2 conftest.cpp >&5 configure:7004: $? = 0 configure:7077: g++ -o conftest.exe -g -O2 conftest.cpp >&5 configure:7077: $? = 0 configure:7077: ./conftest.exe configure:7077: $? = 0 configure:7088: result: yes configure:7101: checking for sys/types.h configure:7101: g++ -c -g -O2 conftest.cpp >&5 configure:7101: $? = 0 configure:7101: result: yes configure:7101: checking for sys/stat.h configure:7101: g++ -c -g -O2 conftest.cpp >&5 configure:7101: $? = 0 configure:7101: result: yes configure:7101: checking for stdlib.h configure:7101: g++ -c -g -O2 conftest.cpp >&5 configure:7101: $? = 0 configure:7101: result: yes configure:7101: checking for string.h configure:7101: g++ -c -g -O2 conftest.cpp >&5 configure:7101: $? = 0 configure:7101: result: yes configure:7101: checking for memory.h configure:7101: g++ -c -g -O2 conftest.cpp >&5 configure:7101: $? = 0 configure:7101: result: yes configure:7101: checking for strings.h configure:7101: g++ -c -g -O2 conftest.cpp >&5 configure:7101: $? = 0 configure:7101: result: yes configure:7101: checking for inttypes.h configure:7101: g++ -c -g -O2 conftest.cpp >&5 configure:7101: $? = 0 configure:7101: result: yes configure:7101: checking for stdint.h configure:7101: g++ -c -g -O2 conftest.cpp >&5 configure:7101: $? = 0 configure:7101: result: yes configure:7101: checking for unistd.h configure:7101: g++ -c -g -O2 conftest.cpp >&5 configure:7101: $? = 0 configure:7101: result: yes configure:7113: checking complex.h usability configure:7113: g++ -c -g -O2 conftest.cpp >&5 configure:7113: $? = 0 configure:7113: result: yes configure:7113: checking complex.h presence configure:7113: g++ -E conftest.cpp configure:7113: $? = 0 configure:7113: result: yes configure:7113: checking for complex.h configure:7113: result: yes configure:7136: checking for sqrt in -lm configure:7161: g++ -o conftest.exe -g -O2 conftest.cpp -lm >&5 conftest.cpp:28:6: warning: declaration of 'char sqrt()' conflicts with built-in declaration 'double sqrt(double)' [-Wbuiltin-declaration-mismatch] char sqrt (); ^~~~ configure:7161: $? = 0 configure:7170: result: yes configure:7288: checking Python version to install configure:7305: result: 2 configure:7310: checking BLAS library configure:7328: result: openblas configure:7346: === checking whether to install the bzip2 SPKG === configure:7520: === checking whether to install the cmake SPKG === configure:7561: checking for cmake >= 3.4 configure:7638: result: configure:7673: === checking whether to install the curl SPKG === configure:7800: === checking whether to install the gcc SPKG === configure:9259: === checking whether to install the gf2x SPKG === configure:9441: === checking whether to install the git SPKG === configure:9483: checking for git configure:9515: result: no configure:9547: === checking whether to install the mpir SPKG === configure:9725: result: using mpir SPKG (via --with-mp=mpir) configure:9812: === checking whether to install the gmp SPKG === configure:9888: === checking whether to install the zlib SPKG === configure:9932: checking if zlib is wanted configure:9954: result: yes configure:9984: checking for inflateEnd in -lz configure:10009: gcc -o conftest.exe -g -O2 conftest.c -lz -lm >&5 /usr/lib/gcc/x86_64-pc-cygwin/7.4.0/../../../../x86_64-pc-cygwin/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status configure:10009: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_LIBM 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char inflateEnd (); | int | main () | { | return inflateEnd (); | ; | return 0; | } configure:10018: result: no configure:10026: checking zlib.h usability configure:10026: gcc -c -g -O2 conftest.c >&5 conftest.c:55:10: fatal error: zlib.h: No such file or directory #include <zlib.h> ^~~~~~~~ compilation terminated. configure:10026: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include <stdio.h> | #ifdef HAVE_SYS_TYPES_H | # include <sys/types.h> | #endif | #ifdef HAVE_SYS_STAT_H | # include <sys/stat.h> | #endif | #ifdef STDC_HEADERS | # include <stdlib.h> | # include <stddef.h> | #else | # ifdef HAVE_STDLIB_H | # include <stdlib.h> | # endif | #endif | #ifdef HAVE_STRING_H | # if !defined STDC_HEADERS && defined HAVE_MEMORY_H | # include <memory.h> | # endif | # include <string.h> | #endif | #ifdef HAVE_STRINGS_H | # include <strings.h> | #endif | #ifdef HAVE_INTTYPES_H | # include <inttypes.h> | #endif | #ifdef HAVE_STDINT_H | # include <stdint.h> | #endif | #ifdef HAVE_UNISTD_H | # include <unistd.h> | #endif | #include <zlib.h> configure:10026: result: no configure:10026: checking zlib.h presence configure:10026: gcc -E conftest.c conftest.c:22:10: fatal error: zlib.h: No such file or directory #include <zlib.h> ^~~~~~~~ compilation terminated. configure:10026: $? = 1 configure: failed program was: | /* confdefs.h */ | #define PACKAGE_NAME "Sage" | #define PACKAGE_TARNAME "sage" | #define PACKAGE_VERSION "8.8" | #define PACKAGE_STRING "Sage 8.8" | #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" | #define PACKAGE_URL "" | #define PACKAGE "sage" | #define VERSION "8.8" | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define HAVE_LIBM 1 | /* end confdefs.h. */ | #include <zlib.h> configure:10026: result: no configure:10026: checking for zlib.h configure:10026: result: no configure:10256: === checking whether to install the libpng SPKG === configure:10298: checking Installing zlib? configure:10301: result: Yes. Install libpng as well. configure:10555: === checking whether to install the mpfr SPKG === configure:10693: result: using Sage's mpfr SPKG configure:10715: === checking whether to install the mpc SPKG === configure:10853: result: using Sage's mpc SPKG configure:10875: === checking whether to install the ntl SPKG === configure:11031: result: using Sage's ntl SPKG configure:11053: === checking whether to install the patch SPKG === configure:11094: checking for GNU patch >= 2.7.0 configure:11171: result: /usr/bin/patch configure:11206: === checking whether to install the pcre SPKG === configure:11507: === checking whether to install the perl_term_readline_gnu SPKG === configure:11597: checking for perl module Term::ReadLine configure:11607: result: ok configure:11615: checking Term::ReadLine module... configure:11619: result: non-GNU configure:11665: === checking whether to install the rw SPKG === configure:11809: === checking whether to install the xz SPKG === configure:12093: === checking whether to install the yasm SPKG === configure:12202: === checking whether to install the zeromq SPKG === configure:12362: checking for Fortran flag needed to accept free-form source configure:12381: gfortran -c -g -O2 conftest.f >&5 conftest.f:2:3: program freeform 1 Error: Non-numeric character in statement label at (1) conftest.f:2:3: program freeform 1 Error: Unclassifiable statement at (1) conftest.f:4:26: print *, 'Hello ', & 1 Error: Expected expression in PRINT statement at (1) conftest.f:5:11: 'world.' 1 Error: Invalid character in name at (1) configure:12381: $? = 1 configure: failed program was: | | program freeform | ! FIXME: how to best confuse non-freeform compilers? | print *, 'Hello ', & | 'world.' | end configure:12381: gfortran -c -g -O2 -ffree-form conftest.f >&5 configure:12381: $? = 0 configure:12390: result: -ffree-form configure:12419: === checking whether to install the gfortran SPKG === configure:12504: === checking whether to install the libffi SPKG === configure:12794: === checking whether to install the ninja_build SPKG === configure:12835: checking for ninja >= 1.7.2 configure:12912: result: configure:13083: checking SPKGs to install configure:13085: result: configure:13174: result: 4ti2-1.6.7.p0 configure:13174: result: alabaster-0.7.12 configure:13174: result: appnope-0.1.0.p0 configure:13174: result: arb-2.16.0.p0 configure:13174: result: atlas-3.10.2.p3 configure:13174: result: autotools-20141105.p0 configure:13174: result: babel-2.6.0 configure:13174: result: backports_abc-0.5 configure:13174: result: backports_functools_lru_cache-1.5 configure:13174: result: backports_shutil_get_terminal_size-1.0.0.p1 configure:13174: result: backports_ssl_match_hostname-3.5.0.1.p0 configure:13174: result: barvinok-0.41.1 configure:13174: result: benzene-20130630 configure:13174: result: bleach-3.0.2 configure:13174: result: bliss-0.73+debian-1+sage-2016-08-02.p0 configure:13174: result: boost-1_66_0 configure:13174: result: boost_cropped-1.66.0.p0 configure:13174: result: brial-1.2.5 configure:13174: result: buckygen-1.0 configure:13174: result: bzip2-1.0.6-20150304.p0 configure:13174: result: cbc-2.9.4.p0 configure:13174: result: ccache-3.3.4 configure:13174: result: cddlib-0.94j configure:13174: result: certifi-2018.11.29 configure:13174: result: cliquer-1.21.p4 configure:13174: result: cmake-3.11.0 configure:13174: result: cocoalib-0.99564 configure:13174: result: combinatorial_designs-20140630.p0 configure:13174: result: compilerwrapper-1.2 configure:13174: result: configparser-3.5.0 configure:13174: result: configure-327 configure:13174: result: conway_polynomials-0.5 configure:13174: result: coxeter3-8ac9c71723c8ca57a836d6381aed125261e44e9e configure:13174: result: cryptominisat-5.6.6 configure:13174: result: csdp-6.2.p0 configure:13174: result: curl-7.62.0.p0 configure:13174: result: cvxopt-1.1.8.p2 configure:13174: result: cycler-0.10.0.p0 configure:13174: result: cypari-2.1.0.p0 configure:13174: result: cysignals-1.10.2 configure:13174: result: cython-0.29.5.p0 configure:13174: result: d3js-3.4.8 configure:13174: result: database_cremona_ellcurve-20161017 configure:13174: result: database_jones_numfield-4 configure:13174: result: database_kohel-20160724 configure:13174: result: database_mutation_class-1.0 configure:13174: result: database_odlyzko_zeta-20061209 configure:13174: result: database_stein_watkins-20110713 configure:13174: result: database_stein_watkins_mini-20070827 configure:13174: result: database_symbolic_data-20070206 configure:13174: result: dateutil-2.5.3 configure:13174: result: decorator-4.3.0 configure:13174: result: deformation-d05941b.p0 configure:13174: result: defusedxml-0.5.0 configure:13174: result: docutils-0.14 configure:13174: result: dot2tex-2.11.3.p0 configure:13174: result: e_antic-0.1.3b0 configure:13174: result: ecl-16.1.2.p5 configure:13174: result: eclib-20190226 configure:13174: result: ecm-7.0.4.p1 configure:13174: result: elliptic_curves-0.8.1 configure:13174: result: entrypoints-0.2.3 configure:13174: result: enum34-1.1.6 configure:13174: result: fflas_ffpack-2.3.2 configure:13174: result: flask-0.10.1.p0 configure:13174: result: flask_autoindex-0.6.p0 configure:13174: result: flask_babel-0.9.p0 configure:13174: result: flask_oldsessions-0.10.p0 configure:13174: result: flask_openid-1.2.5.p0 configure:13174: result: flask_silk-0.2.p0 configure:13174: result: flint-2.5.2.p4 configure:13174: result: flintqs-1.0.p0 configure:13174: result: fplll-5.2.1 configure:13174: result: fpylll-0.4.1dev configure:13174: result: freetype-2.9.1 configure:13174: result: 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latte_int-1.7.5.p0 configure:13174: result: lcalc-1.23.p18 configure:13174: result: libatomic_ops-7.6.2 configure:13174: result: libbraiding-1.0 configure:13174: result: libffi-3.2.1 configure:13174: result: libgd-2.1.1.1.p1 configure:13174: result: libhomfly-1.02r4 configure:13174: result: libogg-1.3.1.p0 configure:13174: result: libpng-1.6.29.p1 configure:13174: result: libtheora-1.1.1 configure:13174: result: lidia-2.3.0+latte-patches-2019-05-02 configure:13174: result: lie-2.2.2 configure:13174: result: linbox-1.5.2 configure:13174: result: lrcalc-1.2.p1 configure:13174: result: lrslib-062+autotools-2017-03-03.p1 configure:13174: result: m4ri-20140914.p0 configure:13174: result: m4rie-20150908.p0 configure:13174: result: markupsafe-1.1.0 configure:13174: result: mathjax-2.7.4.p0 configure:13174: result: matplotlib-2.2.3.p0 configure:13174: result: maxima-5.42.2 configure:13174: result: mcqd-1.0 configure:13174: result: meataxe-1.0 configure:13174: result: mistune-0.8.4 configure:13174: result: modular_decomposition-20100607 configure:13174: result: mpc-1.1.0 configure:13174: result: mpfi-1.5.2 configure:13174: result: mpfr-4.0.1.p0 configure:13174: result: mpfrcx-0.5 configure:13174: result: mpir-3.0.0-644faf502c56f97d9accd301965fc57d6ec70868.p0 configure:13174: result: mpmath-1.1.0 configure:13174: result: nauty-26r1.p0 configure:13174: result: nbconvert-5.4.0 configure:13174: result: nbformat-4.4.0 configure:13174: result: ncurses-6.0.p0 configure:13174: result: networkx-2.2 configure:13174: result: ninja_build-1.8.2 configure:13174: result: normaliz-3.7.2 configure:13174: result: nose-1.3.7 configure:13174: result: notebook-5.7.6.p0 configure:13174: result: notedown-1.5.1 configure:13174: result: ntl-11.3.2 configure:13174: result: numpy-1.16.1 configure:13174: result: openblas-0.3.6.p0 configure:13174: result: openssl-1.1.1b configure:13174: result: ore_algebra-0.3 configure:13174: result: p_group_cohomology-3.1 configure:13174: result: packaging-18.0 configure:13174: result: palp-2.1.p2 configure:13174: result: pandoc_attributes-8bc82f6d configure:13174: result: pandocfilters-1.4.2 configure:13174: result: pari-2.11.1.p2 configure:13174: result: pari_elldata-20161017 configure:13174: result: pari_galdata-20080411.p0 configure:13174: result: pari_galpol-20180625 configure:13174: result: pari_jupyter-1.3.2 configure:13174: result: pari_nftables-20080929 configure:13174: result: pari_seadata-20090618 configure:13174: result: pari_seadata_small-20090618.p0 configure:13178: result: patch-2.7.5 will not be installed (configure check) configure:13174: result: pathlib2-2.3.3 configure:13174: result: pathpy-7.1.p0 configure:13174: result: pcre-8.40.p2 configure:13174: result: perl_term_readline_gnu-1.35 configure:13174: result: pexpect-4.6.0.p0 configure:13174: result: pickleshare-0.7.5 configure:13174: result: pillow-5.3.0.p0 configure:13174: result: pip-18.1 configure:13174: result: pkgconf-0.9.7.p2 configure:13174: result: pkgconfig-1.4.0 configure:13174: result: planarity-3.0.0.5.p0 configure:13174: result: plantri-4.5 configure:13174: result: polylib-5.22.5 configure:13174: result: polymake-3.4 configure:13174: result: polytopes_db-20170220.p0 configure:13174: result: ppl-1.2.p1 configure:13174: result: pplpy-0.8.4 configure:13174: result: primecount-4.7 configure:13174: result: prometheus_client-0.5.0 configure:13174: result: prompt_toolkit-1.0.15 configure:13174: result: psutil-5.2.0.p2 configure:13174: result: ptyprocess-0.5.1.p0 configure:13174: result: pycosat-0.6.3 configure:13174: result: pycygwin-0.1 configure:13174: result: pygments-2.3.1.p0 configure:13174: result: pynac-0.7.24.p0 configure:13174: result: pynormaliz-2.7 configure:13174: result: pyparsing-2.3.0 configure:13174: result: pysingular-0.9.5 configure:13174: result: python2-2.7.15.p1 configure:13174: result: python3-3.7.3.p1 configure:13174: result: python_igraph-0.7.1999 configure:13174: result: python_openid-2.2.5.p0 configure:13174: result: pytz-2018.7 configure:13174: result: pyx-0.12.1.p0 configure:13174: result: pyzmq-17.1.2 configure:13174: result: qepcad-B.1.71 configure:13174: result: qhull-2015-src-7.2.0.p1 configure:13174: result: r-3.6.0 configure:13174: result: ratpoints-2.1.3.p5 configure:13174: result: readline-6.3.008.p0 configure:13174: result: requests-2.13.0 configure:13174: result: rpy2-2.8.2.p1 configure:13174: result: rst2ipynb-0.2.2.p0 configure:13174: result: rubiks-20070912.p21 configure:13174: result: rw-0.7.p0 configure:13174: result: saclib-2.2.7 configure:13174: result: sagenb-1.1.2 configure:13174: result: sagenb_export-3.2 configure:13174: result: sagetex-3.2.p0 configure:13174: result: scandir-1.9.0 configure:13174: result: scipoptsuite-5.0.1 configure:13174: result: scipy-1.2.0 configure:13174: result: scons-1.2.0 configure:13174: result: send2trash-1.5.0 configure:13174: result: setuptools-40.6.3 configure:13174: result: setuptools_scm-3.1.0 configure:13174: result: simplegeneric-0.8.1.p0 configure:13174: result: singledispatch-3.4.0.3.p0 configure:13174: result: singular-4.1.1p2.p0 configure:13174: result: singular_jupyter-0.9.7 configure:13174: result: sip-4.18 configure:13174: result: sirocco-2.0.p0 configure:13174: result: six-1.12.0 configure:13174: result: snowballstemmer-1.2.1.p0 configure:13174: result: speaklater-1.3.p0 configure:13174: result: sphinx-1.8.5.p0 configure:13174: result: sphinxcontrib_websupport-1.1.0 configure:13174: result: sqlite-3270100 configure:13174: result: subprocess32-3.5.3 configure:13174: result: surf-1.0.6-gcc6 configure:13174: result: symmetrica-2.0.p11 configure:13174: result: sympow-1.018.1.p13 configure:13174: result: sympy-1.4.p0 configure:13174: result: tachyon-0.98.9.p7 configure:13174: result: tdlib-0.3.1.p0 configure:13174: result: termcap-1.3.1.p3 configure:13174: result: terminado-0.8.1 configure:13174: result: testpath-0.4.2 configure:13174: result: thebe-9624e0a0.p0 configure:13174: result: threejs-r100 configure:13174: result: tides-2.0.p0 configure:13174: result: topcom-0.17.7 configure:13174: result: tornado-4.5.2 configure:13174: result: traitlets-4.3.2 configure:13174: result: twisted-16.3.0.p0 configure:13174: result: typing-3.6.6 configure:13174: result: valgrind-3.14.0 configure:13174: result: vcversioner-2.16.0.0.p0 configure:13174: result: wcwidth-0.1.7.p0 configure:13174: result: webencodings-0.5.1 configure:13174: result: werkzeug-0.14.1 configure:13174: result: widgetsnbextension-3.4.2 configure:13174: result: xz-5.2.2.p0 configure:13174: result: yasm-1.3.0.p0 configure:13174: result: zeromq-4.2.5 configure:13174: result: zlib-1.2.11.p0 configure:13174: result: zn_poly-0.9.1.p0 configure:13174: result: zope_interface-4.6.0 configure:13426: checking that generated files are newer than configure configure:13432: result: done configure:13471: creating ./config.status ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-unknown-cygwin ac_cv_c_compiler_gnu=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set= ac_cv_env_CFLAGS_value= ac_cv_env_CPPFLAGS_set= ac_cv_env_CPPFLAGS_value= ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set= ac_cv_env_CXXFLAGS_value= ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_FCFLAGS_set= ac_cv_env_FCFLAGS_value= ac_cv_env_FC_set= ac_cv_env_FC_value= ac_cv_env_LDFLAGS_set= ac_cv_env_LDFLAGS_value= ac_cv_env_LIBFFI_CFLAGS_set= ac_cv_env_LIBFFI_CFLAGS_value= ac_cv_env_LIBFFI_LIBS_set= ac_cv_env_LIBFFI_LIBS_value= ac_cv_env_LIBPNG_CFLAGS_set= ac_cv_env_LIBPNG_CFLAGS_value= ac_cv_env_LIBPNG_LIBS_set= ac_cv_env_LIBPNG_LIBS_value= ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_OBJCFLAGS_set= ac_cv_env_OBJCFLAGS_value= ac_cv_env_OBJCXXFLAGS_set= ac_cv_env_OBJCXXFLAGS_value= ac_cv_env_OBJCXX_set= ac_cv_env_OBJCXX_value= ac_cv_env_OBJC_set= ac_cv_env_OBJC_value= ac_cv_env_PCRE_CFLAGS_set= ac_cv_env_PCRE_CFLAGS_value= ac_cv_env_PCRE_LIBS_set= ac_cv_env_PCRE_LIBS_value= ac_cv_env_PKG_CONFIG_LIBDIR_set= ac_cv_env_PKG_CONFIG_LIBDIR_value= ac_cv_env_PKG_CONFIG_PATH_set= ac_cv_env_PKG_CONFIG_PATH_value= ac_cv_env_PKG_CONFIG_set= ac_cv_env_PKG_CONFIG_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_exeext=.exe ac_cv_fc_compiler_gnu=yes ac_cv_fc_freeform=-ffree-form ac_cv_header_complex_h=yes ac_cv_header_inttypes_h=yes ac_cv_header_memory_h=yes ac_cv_header_stdc=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_sys_stat_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_unistd_h=yes ac_cv_header_zlib_h=no ac_cv_host=x86_64-unknown-cygwin ac_cv_lib_m_sqrt=yes ac_cv_lib_z_inflateEnd=no ac_cv_objc_compiler_gnu=no 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deps_iml = $(MP_LIBRARY) gsl $(BLAS) | pkgconf deps_ipaddress = $(PYTHON) | pip deps_ipykernel = $(PYTHON) | ipython jupyter_client pip scandir deps_ipython = $(PYTHON) jinja2 tornado pyzmq pickleshare simplegeneric traitlets | pip backports_shutil_get_terminal_size wcwidth prompt_toolkit pygments pexpect appnope deps_ipython_genutils = $(PYTHON) | pip deps_ipywidgets = $(PYTHON) widgetsnbextension | pip deps_isl = $(MP_LIBRARY) deps_itsdangerous = $(PYTHON) | pip deps_jinja2 = $(PYTHON) markupsafe docutils | setuptools pip deps_jmol = deps_jsonschema = $(PYTHON) vcversioner functools32 | setuptools pip deps_jupymake = | $(STANDARD_PACKAGES) deps_jupyter_client = $(PYTHON) jupyter_core | pip pyzmq dateutil deps_jupyter_core = $(PYTHON) | pip traitlets deps_kenzo = ecl deps_kiwisolver = $(PYTHON) | pip deps_latte_int = $(MP_LIBRARY) ntl 4ti2 cddlib lrslib lidia deps_lcalc = pari mpfr deps_libatomic_ops = deps_libbraiding = deps_libffi = deps_libgd = libpng freetype iconv deps_libhomfly = gc deps_libogg = deps_libpng = zlib deps_libtheora = libogg libpng deps_lidia = $(MP_LIBRARY) deps_lie = readline ncurses deps_linbox = $(MP_LIBRARY) ntl givaro mpfr fplll iml flint fflas_ffpack deps_lrcalc = deps_lrslib = $(MP_LIBRARY) deps_m4ri = libpng deps_m4rie = m4ri deps_markupsafe = $(PYTHON) | setuptools pip deps_mathjax = deps_matplotlib = $(PYTHON) numpy freetype libpng dateutil pyparsing tornado six cycler | setuptools pip pytz functools32 backports_functools_lru_cache subprocess32 kiwisolver deps_maxima = ecl deps_mcqd = | $(STANDARD_PACKAGES) deps_meataxe = deps_mercurial = | pip deps_mistune = $(PYTHON) cython | setuptools pip deps_modular_decomposition = deps_mpc = $(MP_LIBRARY) mpfr deps_mpfi = $(MP_LIBRARY) mpfr deps_mpfr = $(MP_LIBRARY) deps_mpfrcx = $(MP_LIBRARY) mpfr mpc deps_mpi4py = | pip deps_mpir = | yasm deps_mpmath = $(PYTHON) | pip deps_nauty = deps_nbconvert = $(PYTHON) | pip mistune jinja2 pygments traitlets jupyter_core nbformat entrypoints bleach pandocfilters testpath defusedxml deps_nbformat = $(PYTHON) | pip jsonschema deps_ncurses = deps_networkx = $(PYTHON) decorator | pip nose scipy deps_nibabel = | pip deps_ninja_build = | $(PYTHON) deps_normaliz = $(MP_LIBRARY) singular boost_cropped flint e_antic deps_nose = $(PYTHON) | pip deps_notebook = $(PYTHON) | pip ipython jupyter_client ipykernel nbconvert nbformat jinja2 tornado terminado send2trash ipaddress prometheus_client deps_notedown = $(PYTHON) setuptools | pip nbformat nbconvert six pandoc_attributes deps_ntl = $(MP_LIBRARY) gf2x deps_numpy = $(PYTHON) $(BLAS) gfortran | setuptools pip pkgconfig cython deps_openblas = gfortran | $(PYTHON) deps_openssl = deps_ore_algebra = $(PYTHON) | setuptools pip deps_p_group_cohomology = $(PYTHON) cython cysignals singular meataxe $(SAGE_SRC)/sage/matrix/matrix_gfpn_dense.pxd $(SAGE_SRC)/sage/structure/element.pxd $(SAGE_SRC)/sage/matrix/matrix_gfpn_dense.pxd $(SAGE_SRC)/sage/matrix/matrix0.pxd $(SAGE_SRC)/sage/libs/meataxe.pxd $(SAGE_SRC)/sage/rings/morphism.pxd | pip matplotlib gap xz $(SAGERUNTIME) deps_packaging = $(PYTHON) | pip pyparsing six deps_palp = deps_pandoc_attributes = $(PYTHON) setuptools | pip pandocfilters deps_pandocfilters = $(PYTHON) | pip deps_pari = readline $(MP_LIBRARY) | pari_galdata pari_seadata_small deps_pari_elldata = deps_pari_galdata = deps_pari_galpol = deps_pari_jupyter = $(PYTHON) pari | pip cython notebook jupyter_core deps_pari_nftables = deps_pari_seadata = deps_pari_seadata_small = deps_patch = deps_pathlib2 = $(PYTHON) | setuptools pip six scandir deps_pathpy = $(PYTHON) | setuptools setuptools_scm pip deps_pcre = bzip2 deps_perl_term_readline_gnu = readline deps_pexpect = $(PYTHON) ptyprocess | pip deps_pickleshare = $(PYTHON) pathpy pathlib2 | setuptools pip deps_pillow = $(PYTHON) setuptools deps_pip = python2 python3 setuptools deps_pkgconf = | patch deps_pkgconfig = $(PYTHON) | setuptools pip deps_planarity = deps_plantri = deps_polylib = $(MP_LIBRARY) mpfr ntl deps_polymake = $(MP_LIBRARY) bliss cddlib lrslib normaliz perl_term_readline_gnu | ninja_build deps_polytopes_db = deps_ppl = $(MP_LIBRARY) glpk deps_pplpy = $(PYTHON) $(MP_LIBRARY) gmpy2 cysignals mpfr mpc ppl | pip sphinx deps_primecount = cmake deps_prometheus_client = $(PYTHON) | pip deps_prompt_toolkit = $(PYTHON) six wcwidth | pip deps_psutil = $(PYTHON) | pip deps_ptyprocess = $(PYTHON) | pip deps_pybtex = | pip deps_pycosat = $(PYTHON) | pip deps_pycygwin = $(PYTHON) cython | setuptools pip deps_pyflakes = | pip deps_pygments = $(PYTHON) | setuptools pip deps_pynac = $(PYTHON) $(MP_LIBRARY) flint singular giac | pkgconf deps_pynormaliz = $(PYTHON) normaliz | pip deps_pyopenssl = | $(STANDARD_PACKAGES) deps_pyparsing = $(PYTHON) | setuptools pip deps_pysingular = $(PYTHON) singular | pip deps_python2 = zlib readline sqlite libpng bzip2 | xz deps_python3 = zlib readline sqlite libpng bzip2 xz libffi deps_python_igraph = igraph $(PYTHON) | pip deps_python_openid = $(PYTHON) | pip deps_pytz = $(PYTHON) | pip deps_pyx = $(PYTHON) | pip deps_pyzmq = $(PYTHON) cython zeromq | setuptools pip deps_qepcad = readline saclib deps_qhull = | cmake deps_r = $(BLAS) gfortran iconv readline bzip2 xz pcre curl | pkgconf deps_r_jupyter = | $(STANDARD_PACKAGES) deps_ratpoints = $(MP_LIBRARY) deps_readline = ncurses deps_requests = $(PYTHON) | pip deps_rpy2 = $(PYTHON) r six singledispatch | pip deps_rst2ipynb = $(PYTHON) | setuptools pip notedown deps_rubiks = deps_rw = deps_saclib = deps_sagenb = $(PYTHON) | $(SAGERUNTIME) pip babel flask flask_autoindex flask_babel flask_oldsessions flask_openid mathjax twisted sphinx deps_sagenb_export = $(PYTHON) nbconvert ipython six | pip deps_sagetex = $(PYTHON) maxima scipy matplotlib pillow tachyon | $(SAGERUNTIME) sympy elliptic_curves jmol deps_scandir = $(PYTHON) | setuptools pip six deps_scipoptsuite = $(MP_LIBRARY) bliss readline | cmake deps_scipy = $(PYTHON) $(BLAS) gfortran numpy | pip deps_scons = $(PYTHON) deps_send2trash = $(PYTHON) | pip deps_setuptools = python2 python3 deps_setuptools_scm = $(PYTHON) | setuptools pip deps_simplegeneric = $(PYTHON) | setuptools pip deps_singledispatch = $(PYTHON) six | setuptools pip deps_singular = $(MP_LIBRARY) $(PYTHON) ntl flint readline mpfr cddlib deps_singular_jupyter = $(PYTHON) jupyter_client | pip pysingular ipython ipywidgets deps_sip = $(PYTHON) deps_sirocco = | $(STANDARD_PACKAGES) deps_six = $(PYTHON) | setuptools pip deps_snowballstemmer = $(PYTHON) | pip deps_speaklater = $(PYTHON) | pip deps_sphinx = $(PYTHON) | pip docutils jinja2 pygments six snowballstemmer imagesize babel alabaster requests typing sphinxcontrib_websupport packaging deps_sphinxcontrib_websupport = $(PYTHON) | pip deps_sqlalchemy = | pip deps_sqlite = readline deps_subprocess32 = $(PYTHON) | pip python3 deps_surf = $(MP_LIBRARY) deps_symmetrica = deps_sympow = deps_sympy = $(PYTHON) mpmath | pip deps_tachyon = libpng deps_tdlib = | $(STANDARD_PACKAGES) deps_termcap = deps_terminado = $(PYTHON) | pip ptyprocess tornado deps_testpath = $(PYTHON) | pip deps_texlive = | $(STANDARD_PACKAGES) deps_thebe = deps_threejs = deps_tides = $(MP_LIBRARY) mpfr deps_topcom = cddlib deps_tornado = $(PYTHON) backports_abc backports_ssl_match_hostname certifi singledispatch | setuptools pip deps_trac = | pip deps_traitlets = $(PYTHON) | pip ipython_genutils decorator six enum34 deps_twisted = $(PYTHON) | setuptools pip zope_interface deps_typing = $(PYTHON) | pip deps_valgrind = deps_vcversioner = $(PYTHON) | setuptools pip deps_wcwidth = $(PYTHON) | pip setuptools deps_webencodings = $(PYTHON) | setuptools pip deps_werkzeug = $(PYTHON) | pip deps_widgetsnbextension = $(PYTHON) | setuptools pip notebook jupyter_core deps_xz = deps_yasm = deps_zeromq = deps_zlib = deps_zn_poly = $(MP_LIBRARY) deps_zope_interface = $(PYTHON) | pip docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exec_prefix='${prefix}' found_ar='yes' found_latex='yes' found_m4='yes' found_ranlib='yes' found_strip='yes' host='x86_64-unknown-cygwin' host_alias='' host_cpu='x86_64' host_os='cygwin' host_vendor='unknown' htmldir='${docdir}' includedir='${prefix}/include' infodir='${datarootdir}/info' install_sh='${SHELL} /home/SageMath/config/install-sh' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' mandir='${datarootdir}/man' mkdir_p='$(MKDIR_P)' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/home/SageMath/local' program_transform_name='s,x,x,' psdir='${docdir}' sbindir='${exec_prefix}/sbin' sharedstatedir='${prefix}/com' sysconfdir='${prefix}/etc' target_alias='' vers_alabaster = 0.7.12 vers_appnope = 0.1.0.p0 vers_arb = 2.16.0.p0 vers_atlas = 3.10.2.p3 vers_autotools = 20141105.p0 vers_babel = 2.6.0 vers_backports_abc = 0.5 vers_backports_functools_lru_cache = 1.5 vers_backports_shutil_get_terminal_size = 1.0.0.p1 vers_backports_ssl_match_hostname = 3.5.0.1.p0 vers_barvinok = 0.41.1 vers_beautifulsoup = beautifulsoup vers_benzene = 20130630 vers_biopython = biopython vers_bleach = 3.0.2 vers_bliss = 0.73+debian-1+sage-2016-08-02.p0 vers_boost = 1_66_0 vers_boost_cropped = 1.66.0.p0 vers_brial = 1.2.5 vers_brian = brian vers_buckygen = 1.0 vers_bzip2 = 1.0.6-20150304.p0 vers_cbc = 2.9.4.p0 vers_ccache = 3.3.4 vers_cddlib = 0.94j vers_certifi = 2018.11.29 vers_cliquer = 1.21.p4 vers_cmake = 3.11.0 vers_cocoalib = 0.99564 vers_combinatorial_designs = 20140630.p0 vers_compilerwrapper = 1.2 vers_configparser = 3.5.0 vers_configure = 327 vers_conway_polynomials = 0.5 vers_coxeter3 = 8ac9c71723c8ca57a836d6381aed125261e44e9e vers_cryptominisat = 5.6.6 vers_csdp = 6.2.p0 vers_curl = 7.62.0.p0 vers_cvxopt = 1.1.8.p2 vers_cycler = 0.10.0.p0 vers_cypari = 2.1.0.p0 vers_cysignals = 1.10.2 vers_cython = 0.29.5.p0 vers_d3js = 3.4.8 vers_database_cremona_ellcurve = 20161017 vers_database_jones_numfield = 4 vers_database_kohel = 20160724 vers_database_mutation_class = 1.0 vers_database_odlyzko_zeta = 20061209 vers_database_stein_watkins = 20110713 vers_database_stein_watkins_mini = 20070827 vers_database_symbolic_data = 20070206 vers_dateutil = 2.5.3 vers_decorator = 4.3.0 vers_deformation = d05941b.p0 vers_defusedxml = 0.5.0 vers_docutils = 0.14 vers_dot2tex = 2.11.3.p0 vers_e_antic = 0.1.3b0 vers_ecl = 16.1.2.p5 vers_eclib = 20190226 vers_ecm = 7.0.4.p1 vers_elliptic_curves = 0.8.1 vers_entrypoints = 0.2.3 vers_enum34 = 1.1.6 vers_fflas_ffpack = 2.3.2 vers_flask = 0.10.1.p0 vers_flask_autoindex = 0.6.p0 vers_flask_babel = 0.9.p0 vers_flask_oldsessions = 0.10.p0 vers_flask_openid = 1.2.5.p0 vers_flask_silk = 0.2.p0 vers_flint = 2.5.2.p4 vers_flintqs = 1.0.p0 vers_fplll = 5.2.1 vers_fpylll = 0.4.1dev vers_freetype = 2.9.1 vers_fricas = 1.3.5 vers_frobby = 0.9.0.p2 vers_functools32 = 3.2.3-2.p0 vers_future = 0.17.1 vers_gambit = 15.1.1.p0 vers_gap = 4.10.1.p0 vers_gap3 = 04jul17 vers_gap_jupyter = 0.9 vers_gap_packages = 4.10.1.p0 vers_gc = 7.6.4.p0 vers_gcc = 7.2.0 vers_gdb = 8.2 vers_gf2x = 1.2.p0 vers_gfan = 0.6.2.p1 vers_gfortran = 7.2.0 vers_giac = 1.5.0.37.p1 vers_giacpy_sage = 0.6.7 vers_git = 2.11.0 vers_git_trac = 20160625.p0 vers_givaro = 4.0.4 vers_glpk = 4.63.p2 vers_glucose = 4.1 vers_gmp = 6.1.2 vers_gmpy2 = 2.1.0b1 vers_gp2c = 0.0.10.p0 vers_graphs = 20161026.p0 vers_gsl = 2.5 vers_guppy = guppy vers_html5lib = 1.0.1 vers_iconv = 1.15 vers_igraph = 0.7.1999.p0 vers_imagesize = 1.1.0 vers_iml = 1.0.4p1.p2 vers_ipaddress = 1.0.22 vers_ipykernel = 4.8.2 vers_ipython = 5.8.0 vers_ipython_genutils = 0.2.0 vers_ipywidgets = 7.4.2 vers_isl = 0.20 vers_itsdangerous = 1.1.0 vers_jinja2 = 2.10 vers_jmol = 14.6.1_2016.07.11.p1 vers_jsonschema = 2.6.0 vers_jupymake = 0.9 vers_jupyter_client = 5.2.4 vers_jupyter_core = 4.4.0 vers_kenzo = 1.1.7-r3 vers_kiwisolver = 1.0.1 vers_latte_int = 1.7.5.p0 vers_lcalc = 1.23.p18 vers_libatomic_ops = 7.6.2 vers_libbraiding = 1.0 vers_libffi = 3.2.1 vers_libgd = 2.1.1.1.p1 vers_libhomfly = 1.02r4 vers_libogg = 1.3.1.p0 vers_libpng = 1.6.29.p1 vers_libtheora = 1.1.1 vers_lidia = 2.3.0+latte-patches-2019-05-02 vers_lie = 2.2.2 vers_linbox = 1.5.2 vers_lrcalc = 1.2.p1 vers_lrslib = 062+autotools-2017-03-03.p1 vers_m4ri = 20140914.p0 vers_m4rie = 20150908.p0 vers_markupsafe = 1.1.0 vers_mathjax = 2.7.4.p0 vers_matplotlib = 2.2.3.p0 vers_maxima = 5.42.2 vers_mcqd = 1.0 vers_meataxe = 1.0 vers_mercurial = mercurial vers_mistune = 0.8.4 vers_modular_decomposition = 20100607 vers_mpc = 1.1.0 vers_mpfi = 1.5.2 vers_mpfr = 4.0.1.p0 vers_mpfrcx = 0.5 vers_mpi4py = mpi4py vers_mpir = 3.0.0-644faf502c56f97d9accd301965fc57d6ec70868.p0 vers_mpmath = 1.1.0 vers_nauty = 26r1.p0 vers_nbconvert = 5.4.0 vers_nbformat = 4.4.0 vers_ncurses = 6.0.p0 vers_networkx = 2.2 vers_nibabel = nibabel vers_ninja_build = 1.8.2 vers_normaliz = 3.7.2 vers_nose = 1.3.7 vers_notebook = 5.7.6.p0 vers_notedown = 1.5.1 vers_ntl = 11.3.2 vers_numpy = 1.16.1 vers_openblas = 0.3.6.p0 vers_openssl = 1.1.1b vers_ore_algebra = 0.3 vers_p_group_cohomology = 3.1 vers_packaging = 18.0 vers_palp = 2.1.p2 vers_pandoc_attributes = 8bc82f6d vers_pandocfilters = 1.4.2 vers_pari = 2.11.1.p2 vers_pari_elldata = 20161017 vers_pari_galdata = 20080411.p0 vers_pari_galpol = 20180625 vers_pari_jupyter = 1.3.2 vers_pari_nftables = 20080929 vers_pari_seadata = 20090618 vers_pari_seadata_small = 20090618.p0 vers_patch = 2.7.5 vers_pathlib2 = 2.3.3 vers_pathpy = 7.1.p0 vers_pcre = 8.40.p2 vers_perl_term_readline_gnu = 1.35 vers_pexpect = 4.6.0.p0 vers_pickleshare = 0.7.5 vers_pillow = 5.3.0.p0 vers_pip = 18.1 vers_pkgconf = 0.9.7.p2 vers_pkgconfig = 1.4.0 vers_planarity = 3.0.0.5.p0 vers_plantri = 4.5 vers_polylib = 5.22.5 vers_polymake = 3.4 vers_polytopes_db = 20170220.p0 vers_ppl = 1.2.p1 vers_pplpy = 0.8.4 vers_primecount = 4.7 vers_prometheus_client = 0.5.0 vers_prompt_toolkit = 1.0.15 vers_psutil = 5.2.0.p2 vers_ptyprocess = 0.5.1.p0 vers_pybtex = pybtex vers_pycosat = 0.6.3 vers_pycygwin = 0.1 vers_pyflakes = pyflakes vers_pygments = 2.3.1.p0 vers_pynac = 0.7.24.p0 vers_pynormaliz = 2.7 vers_pyopenssl = pyopenssl vers_pyparsing = 2.3.0 vers_pysingular = 0.9.5 vers_python2 = 2.7.15.p1 vers_python3 = 3.7.3.p1 vers_python_igraph = 0.7.1999 vers_python_openid = 2.2.5.p0 vers_pytz = 2018.7 vers_pyx = 0.12.1.p0 vers_pyzmq = 17.1.2 vers_qepcad = B.1.71 vers_qhull = 2015-src-7.2.0.p1 vers_r = 3.6.0 vers_r_jupyter = r_jupyter vers_ratpoints = 2.1.3.p5 vers_readline = 6.3.008.p0 vers_requests = 2.13.0 vers_rpy2 = 2.8.2.p1 vers_rst2ipynb = 0.2.2.p0 vers_rubiks = 20070912.p21 vers_rw = 0.7.p0 vers_saclib = 2.2.7 vers_sagenb = 1.1.2 vers_sagenb_export = 3.2 vers_sagetex = 3.2.p0 vers_scandir = 1.9.0 vers_scipoptsuite = 5.0.1 vers_scipy = 1.2.0 vers_scons = 1.2.0 vers_send2trash = 1.5.0 vers_setuptools = 40.6.3 vers_setuptools_scm = 3.1.0 vers_simplegeneric = 0.8.1.p0 vers_singledispatch = 3.4.0.3.p0 vers_singular = 4.1.1p2.p0 vers_singular_jupyter = 0.9.7 vers_sip = 4.18 vers_sirocco = 2.0.p0 vers_six = 1.12.0 vers_snowballstemmer = 1.2.1.p0 vers_speaklater = 1.3.p0 vers_sphinx = 1.8.5.p0 vers_sphinxcontrib_websupport = 1.1.0 vers_sqlalchemy = sqlalchemy vers_sqlite = 3270100 vers_subprocess32 = 3.5.3 vers_surf = 1.0.6-gcc6 vers_symmetrica = 2.0.p11 vers_sympow = 1.018.1.p13 vers_sympy = 1.4.p0 vers_tachyon = 0.98.9.p7 vers_tdlib = 0.3.1.p0 vers_termcap = 1.3.1.p3 vers_terminado = 0.8.1 vers_testpath = 0.4.2 vers_texlive = texlive vers_thebe = 9624e0a0.p0 vers_threejs = r100 vers_tides = 2.0.p0 vers_topcom = 0.17.7 vers_tornado = 4.5.2 vers_trac = trac vers_traitlets = 4.3.2 vers_twisted = 16.3.0.p0 vers_typing = 3.6.6 vers_valgrind = 3.14.0 vers_vcversioner = 2.16.0.0.p0 vers_wcwidth = 0.1.7.p0 vers_webencodings = 0.5.1 vers_werkzeug = 0.14.1 vers_widgetsnbextension = 3.4.2 vers_xz = 5.2.2.p0 vers_yasm = 1.3.0.p0 vers_zeromq = 4.2.5 vers_zlib = 1.2.11.p0 vers_zn_poly = 0.9.1.p0 vers_zope_interface = 4.6.0 ## ------------------- ## ## File substitutions. ## ## ------------------- ## SAGE_MAKE_DEPS='/home/SageMath/build/make/deps' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define PACKAGE_NAME "Sage" #define PACKAGE_TARNAME "sage" #define PACKAGE_VERSION "8.8" #define PACKAGE_STRING "Sage 8.8" #define PACKAGE_BUGREPORT "sage-devel@googlegroups.com" #define PACKAGE_URL "" #define PACKAGE "sage" #define VERSION "8.8" #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define HAVE_LIBM 1 configure: exit 0 ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by Sage config.status 8.8, which was generated by GNU Autoconf 2.69. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ ./config.status on DESKTOP-2G3LEO2 config.status:2588: creating build/make/Makefile-auto config.status:2588: creating build/make/Makefile config.status:2588: creating src/Makefile config.status:2588: creating src/bin/sage-env-config config.status:2765: executing depfiles commands config.status:2765: executing mkdirs commands config.status:2892: creating directory /home/SageMath/logs/pkgs config.status:2892: creating directory local config.status:2892: creating directory local/bin config.status:2892: creating directory local/etc config.status:2892: creating directory local/include config.status:2892: creating directory local/lib config.status:2892: creating directory local/share config.status:2892: creating directory local/var/lib/sage/installed
Found local metadata for zlib-1.2.11.p0 Attempting to download package zlib-1.2.11.tar.gz from mirrors Downloading the Sage mirror list Searching fastest mirror 346ms: http://ftp.kaist.ac.kr/sage/ 367ms: http://ftp.leg.uct.ac.za/pub/packages/sage/ 81ms: http://ftp.ntua.gr/pub/sagemath/ 21ms: http://ftp.rediris.es/mirror/sagemath/ 585ms: http://ftp.riken.jp/sagemath/ 185ms: http://ftp.sun.ac.za/ftp/pub/mirrors/www.sagemath.org/ 537ms: http://ftp.yz.yamagata-u.ac.jp/pub/math/sage/ 238ms: http://linorg.usp.br/sage/ 1040ms: http://mirror.aarnet.edu.au/pub/sage/ 188ms: http://mirror.ufs.ac.za/sagemath/ 159ms: http://mirror.yandex.ru/mirrors/sage.math.washington.edu/ 137ms: http://mirrors.mit.edu/sage/ 937ms: http://mirrors.tuna.tsinghua.edu.cn/sagemath/ 2617ms: http://mirrors.ustc.edu.cn/sagemath/ 265ms: http://mirrors.xmission.com/sage/ 111ms: http://sage.mirror.garr.it/mirrors/sage/ 750ms: http://sagemath.c3sl.ufpr.br/ 385ms: http://sagemath.mirror.ac.za/ 242ms: http://sagemath.nust.na/sage/ 138ms: http://www-ftp.lip6.fr/pub/math/sagemath/ 157ms: http://www.cecm.sfu.ca/sage/ 84ms: http://www.mirrorservice.org/sites/www.sagemath.org/ 266ms: https://mirror-hk.koddos.net/sagemath/ 43ms: https://mirror.koddos.net/sagemath/ 188ms: https://mirrors.up.pt/pub/sage/ Fastest mirror: http://ftp.rediris.es/mirror/sagemath/ http://ftp.rediris.es/mirror/sagemath/spkg/upstream/zlib/zlib-1.2.11.tar.gz [......................................................................] zlib-1.2.11.p0 ==================================================== Setting up build directory for zlib-1.2.11.p0 Finished extraction Applying patches from ../patches... Applying ../patches/cygwin-gzopen_w.patch patching file gzguts.h patching file win32/zlib.def **************************************************** Host system: CYGWIN_NT-10.0 DESKTOP-2G3LEO2 3.0.5(0.338/5/3) 2019-03-31 11:17 x86_64 Cygwin **************************************************** C compiler: gcc C compiler version: /home/SageMath/build/bin/sage-spkg: line 802: /home/SageMath/local/bin/gcc: cannot execute binary file: Exec format error **************************************************** Building zlib-1.2.11.p0 make[3]: Entering directory '/home/SageMath/local/var/tmp/sage/build/zlib-1.2.11.p0/src' gcc -O3 -Wall -c -o adler32.o adler32.c /home/SageMath/local/bin/gcc: /home/SageMath/local/bin/gcc: cannot execute binary file make[3]: *** [Makefile:85: adler32.o] Error 126 make[3]: Leaving directory '/home/SageMath/local/var/tmp/sage/build/zlib-1.2.11.p0/src' ******************************************************************************** Error building zlib-1.2.11.p0 ******************************************************************************** real 0m0.949s user 0m0.105s sys 0m0.412s ************************************************************************ Error installing package zlib-1.2.11.p0 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log file /home/SageMath/logs/pkgs/zlib-1.2.11.p0.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/SageMath/local/var/tmp/sage/build/zlib-1.2.11.p0 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/SageMath/local/var/tmp/sage/build/zlib-1.2.11.p0' && '/home/SageMath/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************