> Le 15 avr. 2020 à 16:41, Dima Pasechnik <dimp...@gmail.com> a écrit :
> 
> You need to copy/symlink all these m4 files.
> Spicifically, you seems to have forgotten lib-link.m4, which contains
> the definition of AC_LIB_RPATH
> you see the error about.

Right. thank you. 

This way it’s much better and after .configure, I get

config.status: creating directory local/var/lib/sage/installed
configure: notice: the following SPKGs did not find equivalent system packages: 
flintqs gf2x gp2c libsemigroups nauty pari_elldata pari_galpol pari_nftables 
pari_seadata perl_term_readline_gnu
checking for the package system in use... homebrew
configure: No equivalent system packages for homebrew are known to Sage


The last part is curious...

I will follow #29504 <https://trac.sagemath.org/ticket/29504> 

> 
> On Wed, Apr 15, 2020 at 10:19 PM David Coudert <david.coud...@inria.fr> wrote:
>> 
>> 
>> 
>> Le 15 avr. 2020 à 15:50, Dima Pasechnik <dimp...@gmail.com> a écrit :
>> 
>> On Wed, Apr 15, 2020 at 7:13 PM David Coudert <david.coud...@inria.fr> wrote:
>> 
>> 
>> 
>> 
>> Le 15 avr. 2020 à 12:40, Dima Pasechnik <dimp...@gmail.com> a écrit :
>> 
>> On Wed, Apr 15, 2020 at 6:22 PM David Coudert <david.coud...@inria.fr> wrote:
>> 
>> 
>> I tried that already, but:
>> 
>> confetti:sage dcoudert$ brew install gettext
>> Warning: gettext 0.20.1 is already installed and up-to-date
>> To reinstall 0.20.1, run `brew reinstall gettext`
>> confetti:sage dcoudert$ brew link --force gettext
>> Warning: Refusing to link macOS provided/shadowed software: gettext
>> If you need to have gettext first in your PATH run:
>> echo 'export PATH="/usr/local/opt/gettext/bin:$PATH"' >> ~/.bash_profile
>> 
>> For compilers to find gettext you may need to set:
>> export LDFLAGS="-L/usr/local/opt/gettext/lib"
>> export CPPFLAGS="-I/usr/local/opt/gettext/include"
>> 
>> 
>> this is not enough, as you need m4 macros that come with gettext, in
>> particular iconv.m4
>> I am not sure where brew installes them exactly, but probably
>> somewhere under /usr/local/opt/gettext/
>> Probably /usr/local/opt/gettext/share/aclocal
>> but you can find it by running
>> 
>> find /usr/local/opt/ -name iconv.m4
>> 
>> and then
>> 
>> export M4PATH=$M4PATH:/usr/local/opt/gettext/share/aclocal # (or
>> whatever the correct value of the directory is)
>> ./bootstrap
>> 
>> PS. Homebrew should get a bug report on this, I gather…
>> 
>> 
>> not working :((
>> 
>> confetti:sage dcoudert$ ll /usr/local/opt/gettext/share/aclocal/
>> total 280
>> -rw-r--r--  1 dcoudert  staff  14483 12 mai  2019 gettext.m4
>> -rw-r--r--  1 dcoudert  staff  21489 12 mai  2019 host-cpu-c-abi.m4
>> -rw-r--r--  1 dcoudert  staff   9731 12 mai  2019 iconv.m4
>> -rw-r--r--  1 dcoudert  staff   3321 12 mai  2019 intlmacosx.m4
>> -rw-r--r--  1 dcoudert  staff   5370 12 mai  2019 lib-ld.m4
>> -rw-r--r--  1 dcoudert  staff  32772 15 avr 09:35 lib-link.m4
>> -rw-r--r--  1 dcoudert  staff   9680 15 avr 09:35 lib-prefix.m4
>> -rw-r--r--  1 dcoudert  staff   1229 12 mai  2019 nls.m4
>> -rw-r--r--  1 dcoudert  staff  18831 12 mai  2019 po.m4
>> -rw-r--r--  1 dcoudert  staff   3092 12 mai  2019 progtest.m4
>> confetti:sage dcoudert$ export 
>> M4PATH=$M4PATH:/usr/local/opt/gettext/share/aclocal/
>> 
>> 
>> maybe it should not have / at the end?
>> 
>> Anyway, I presume you can just copy or symlink these files to
>> /usr/local/share/aclocal
>> and try ./bootstrap again
>> 
>> 
>> 
>> I tried that and it’s not better
>> 
>> confetti:sage dcoudert$ ./bootstrap
>> rm -rf config configure build/make/Makefile-auto.in
>> rm -f src/doc/en/installation/*.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/arch.txt and 
>> src/doc/en/installation/arch-optional.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/debian.txt and 
>> src/doc/en/installation/debian-optional.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/fedora.txt and 
>> src/doc/en/installation/fedora-optional.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/cygwin.txt and 
>> src/doc/en/installation/cygwin-optional.txt
>> bootstrap:69: installing 'config/config.rpath'
>> m4/sage_spkg_configures.m4:103: warning: AC_LIB_RPATH is m4_require'd but 
>> not m4_defun'd
>> /usr/local/share/aclocal/iconv.m4:19: AM_ICONV_LINKFLAGS_BODY is expanded 
>> from...
>> /usr/local/share/aclocal/iconv.m4:226: AM_ICONV_LINK is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> m4/sage_spkg_collect.m4:310: SAGE_SPKG_COLLECT is expanded from...
>> m4/sage_spkg_configures.m4:103: the top level
>> m4/sage_spkg_configures.m4:103: warning: AC_LIB_RPATH is m4_require'd but 
>> not m4_defun'd
>> /usr/local/share/aclocal/iconv.m4:19: AM_ICONV_LINKFLAGS_BODY is expanded 
>> from...
>> /usr/local/share/aclocal/iconv.m4:226: AM_ICONV_LINK is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> m4/sage_spkg_collect.m4:310: SAGE_SPKG_COLLECT is expanded from...
>> m4/sage_spkg_configures.m4:103: the top level
>> m4/sage_spkg_configures.m4:103: warning: AC_LIB_RPATH is m4_require'd but 
>> not m4_defun'd
>> aclocal.m4:41: AM_ICONV_LINKFLAGS_BODY is expanded from...
>> aclocal.m4:248: AM_ICONV_LINK is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> m4/sage_spkg_collect.m4:310: SAGE_SPKG_COLLECT is expanded from...
>> m4/sage_spkg_configures.m4:103: the top level
>> configure.ac:336: installing 'config/compile'
>> configure.ac:113: installing 'config/config.guess'
>> configure.ac:113: installing 'config/config.sub'
>> configure.ac:68: installing 'config/install-sh'
>> configure.ac:68: installing 'config/missing'
>> m4/sage_spkg_configures.m4:103: warning: AC_LIB_RPATH is m4_require'd but 
>> not m4_defun'd
>> aclocal.m4:41: AM_ICONV_LINKFLAGS_BODY is expanded from...
>> aclocal.m4:248: AM_ICONV_LINK is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> ../../lib/m4sugar/m4sh.m4:643: AS_IF is expanded from...
>> m4/sage_spkg_collect.m4:310: SAGE_SPKG_COLLECT is expanded from...
>> m4/sage_spkg_configures.m4:103: the top level
>> configure:20560: error: possibly undefined macro: AC_LIB_RPATH
>>      If this token and others are legitimate, please use m4_pattern_allow.
>>      See the Autoconf documentation.
>> configure:20565: error: possibly undefined macro: AC_LIB_LINKFLAGS_BODY
>> configure:20573: error: possibly undefined macro: AC_LIB_APPENDTOVAR
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> confetti:sage dcoudert$ ./bootstrap
>> rm -rf config configure build/make/Makefile-auto.in
>> rm -f src/doc/en/installation/*.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/arch.txt and 
>> src/doc/en/installation/arch-optional.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/debian.txt and 
>> src/doc/en/installation/debian-optional.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/fedora.txt and 
>> src/doc/en/installation/fedora-optional.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/cygwin.txt and 
>> src/doc/en/installation/cygwin-optional.txt
>> bootstrap:69: installing 'config/config.rpath'
>> build/pkgs/iconv/spkg-configure.m4:2: warning: macro 'AM_ICONV' not found in 
>> library
>> configure.ac:336: installing 'config/compile'
>> configure.ac:113: installing 'config/config.guess'
>> configure.ac:113: installing 'config/config.sub'
>> configure.ac:68: installing 'config/install-sh'
>> configure.ac:68: installing 'config/missing'
>> configure:20606: error: possibly undefined macro: AM_ICONV
>>     If this token and others are legitimate, please use m4_pattern_allow.
>>     See the Autoconf documentation.
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> 
>> even setting the LDFLAGS and CPPFLAGS, I still get
>> Checking whether SageMath should install SPKG iconv...
>> ./configure: line 20606: AM_ICONV: command not found
>> configure: no suitable system package found for SPKG iconv
>> 
>> 
>> I can work with that for now.
>> 
>> Best,
>> David.
>> 
>> 
>> Le 15 avr. 2020 à 12:00, Dima Pasechnik <dimp...@gmail.com> a écrit :
>> 
>> On Wed, Apr 15, 2020 at 5:33 PM David Coudert <david.coud...@inria.fr> wrote:
>> 
>> 
>> it gives the following. Not clear to me.
>> 
>> confetti:sage dcoudert$ ./bootstrap
>> rm -rf config configure build/make/Makefile-auto.in
>> rm -f src/doc/en/installation/*.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/arch.txt and 
>> src/doc/en/installation/arch-optional.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/debian.txt and 
>> src/doc/en/installation/debian-optional.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/fedora.txt and 
>> src/doc/en/installation/fedora-optional.txt
>> src/doc/bootstrap:48: installing src/doc/en/installation/cygwin.txt and 
>> src/doc/en/installation/cygwin-optional.txt
>> bootstrap:69: installing 'config/config.rpath'
>> build/pkgs/iconv/spkg-configure.m4:2: warning: macro 'AM_ICONV' not found in 
>> library
>> configure.ac:336: installing 'config/compile'
>> configure.ac:113: installing 'config/config.guess'
>> configure.ac:113: installing 'config/config.sub'
>> configure.ac:68: installing 'config/install-sh'
>> configure.ac:68: installing 'config/missing'
>> configure:20606: error: possibly undefined macro: AM_ICONV
>>   If this token and others are legitimate, please use m4_pattern_allow.
>>   See the Autoconf documentation.
>> 
>> 
>> internet says that you need
>> 
>> brew Install gettext
>> brew link --force gettext
>> 
>> 
>> 
>> confetti:sage dcoudert$
>> 
>> 
>> Le 15 avr. 2020 à 11:26, David Coudert <david.coud...@inria.fr> a écrit :
>> 
>> no. I will try that.
>> David.
>> 
>> Le 15 avr. 2020 à 11:24, Dima Pasechnik <dimp...@gmail.com> a écrit :
>> 
>> On Wed, Apr 15, 2020 at 4:58 PM David Coudert <david.coud...@inria.fr> wrote:
>> 
>> 
>> unfortunately not.
>> I installed gettext with brew some time ago now and added 
>> /usr/local/opt/gettext/bin to my PATH, but it’s not working.
>> 
>> did you re-run
>> 
>> ./bootstrap
>> 
>> ?
>> 
>> Checking whether SageMath should install SPKG iconv...
>> ./configure: line 20606: AM_ICONV: command not found
>> configure: no suitable system package found for SPKG iconv
>> 
>> 
>> 
>> Le 15 avr. 2020 à 03:06, Dima Pasechnik <dimp...@gmail.com> a écrit :
>> 
>> On Wed, Apr 15, 2020 at 2:22 AM David Coudert <david.coud...@inria.fr> wrote:
>> 
>> 
>> 
>> 
>> Le 14 avr. 2020 à 18:15, John H Palmieri <jhpalmier...@gmail.com> a écrit :
>> 
>> I would suggest two things:
>> 
>> $ brew install pkg-config
>> 
>> and then before building Sage, while in SAGE_ROOT:
>> 
>> $ source .homebrew-build-env
>> 
>> Then try ./configure to see what it says at the end about system packages.
>> 
>> 
>> 
>> I installed some more packages and did what you proposed.
>> I still get issues with pari / flint and so all related packages.
>> 
>> configure: notice: the following SPKGs did not find equivalent system 
>> packages: arb brial cddlib cliquer eclib ecm fflas_ffpack flint flintqs 
>> fplll gf2x givaro gp2c iconv lcalc libatomic_ops libbraiding libsemigroups 
>> lrcalc m4rie nauty pari pari_elldata pari_galdata pari_galpol pari_nftables 
>> pari_seadata pari_seadata_small perl_term_readline_gnu planarity r rw 
>> symmetrica tachyon
>> checking for the package system in use... homebrew
>> configure: hint: installing the following system packages is recommended and 
>> may avoid building some of the above SPKGs from source:
>> configure:   $ brew install r
>> 
>> I also have an issue with AM_ICONV, although I have gettext (with path in 
>> $PATH), readline (recognized) and libiconv.
>> Checking whether SageMath should install SPKG iconv...
>> ./configure: line 20606: AM_ICONV: command not found
>> configure: no suitable system package found for SPKG iconv
>> 
>> 
>> AM_ICONV is a part of gettext
>> 
>> brew install gettext
>> 
>> should fix it.
>> 
>> 
>> Don’t know how to fix that.
>> I think it’s currently why r is not accepted.
>> 
>> Best,
>> David.
>> 
>> 
>> 
>> On Tuesday, April 14, 2020 at 6:21:40 AM UTC-7, David Coudert wrote:
>> 
>> 
>> I assume there is nothing simple I can do to fix this.
>> Thanks,
>> David.
>> 
>> Le 14 avr. 2020 à 15:09, Dima Pasechnik <dim...@gmail.com> a écrit :
>> 
>> On Tue, Apr 14, 2020 at 8:41 PM David Coudert <david....@inria.fr> wrote:
>> 
>> 
>> I have similar issues on osx.
>> 
>> I installed several packages using brew. Some of them are recognized, but 
>> not some others.
>> I suspect that I'm missing some dependencies, and possibly some environment 
>> variables.
>> 
>> For instance, I installed amp, mpfr, mpir, ntl and flint, and flint is the 
>> only one not accepted. Why ?
>> 
>> I have also an issue with readline. I'm unable to tell sage that it has been 
>> installed with brew :(
>> 
>> Any advise is more than welcome.
>> Best,
>> David.
>> 
>> -----------------------------------------------------------------------------
>> 
>> Checking whether SageMath should install SPKG mpfr...
>> 
>> checking installing gmp/mpir? ... no
>> 
>> checking mpfr.h usability... yes
>> 
>> checking mpfr.h presence... yes
>> 
>> checking for mpfr.h... yes
>> 
>> checking for library containing mpfr_free_pool... -lmpfr
>> 
>> configure: will use system package and not install SPKG mpfr
>> 
>> using mpfr library from the system
>> 
>> -----------------------------------------------------------------------------
>> 
>> Checking whether SageMath should install SPKG ntl...
>> 
>> checking installing gmp/mpir? ... no
>> 
>> checking NTL/ZZ.h usability... yes
>> 
>> checking NTL/ZZ.h presence... yes
>> 
>> checking for NTL/ZZ.h... yes
>> 
>> checking whether we can link a program using NTL... yes
>> 
>> checking NTL version >= 10.3... 11.4.3
>> 
>> configure: will use system package and not install SPKG ntl
>> 
>> using ntl library from the system
>> 
>> -----------------------------------------------------------------------------
>> 
>> Checking whether SageMath should install SPKG flint...
>> 
>> checking installing mpfr or ntl? ... checking flint/flint.h usability... yes
>> 
>> checking flint/flint.h presence... yes
>> 
>> checking for flint/flint.h... yes
>> 
>> checking for library containing fmpz_mat_is_hadamard... -lflint
>> 
>> checking for library containing fmpz_poly_get_ZZX... no
>> 
>> configure: no suitable system package found for SPKG flint
>> 
>> using Sage's flint SPKG
>> 
>> 
>> Apparently in your Arch Flint is not linked with NTL, while this is a
>> requirement for it to be
>> in useful in Sage.
>> 
>> E.g. that's on Debian:
>> 
>> dimpase@penguin:~/sage$ ldd /usr/lib/x86_64-linux-gnu/libflint-arb.so
>> linux-vdso.so.1 (0x00007fff6a5fe000)
>> libflint-2.5.2.so => /usr/lib/libflint-2.5.2.so (0x00007d084386d000)
>> libmpfr.so.6 => /usr/lib/x86_64-linux-gnu/libmpfr.so.6 (0x00007d08437eb000)
>> libgmp.so.10 => /usr/lib/x86_64-linux-gnu/libgmp.so.10 (0x00007d0843768000)
>> libm.so.6 => /lib/x86_64-linux-gnu/libm.so.6 (0x00007d08435e5000)
>> libpthread.so.0 => /lib/x86_64-linux-gnu/libpthread.so.0 (0x00007d08435c4000)
>> libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007d0843403000)
>> /lib64/ld-linux-x86-64.so.2 (0x00007d0843e39000)
>> libntl.so.35 => /usr/lib/libntl.so.35 (0x00007d0842fd2000)
>> libstdc++.so.6 => /usr/lib/x86_64-linux-gnu/libstdc++.so.6 
>> (0x00007d0842e4e000)
>> libgcc_s.so.1 => /lib/x86_64-linux-gnu/libgcc_s.so.1 (0x00007d0842e34000)
>> libgf2x.so.1 => /usr/lib/x86_64-linux-gnu/libgf2x.so.1 (0x00007d0842c26000)
>> 
>> So you see libntl there.
>> 
>> 
>> 
>> 
>> -----------------------------------------------------------------------------
>> 
>> 
>> 
>> 
>> 
>> 
>> Le jeudi 19 mars 2020 14:52:46 UTC+1, vdelecroix a écrit :
>> 
>> 
>> Dear all,
>> 
>> Thanks to hard work it is now possible to use some package from
>> the system! That is great! But on my archlinux computer that also
>> has sage installed from the package manager the following
>> packages are still detected has "to be installed"
>> 
>> * eclib-20190909
>> * givaro-4.1.1
>> * lcalc-1.23.p19
>> * pari-2.11.2
>> * pari_galdata-20080411.p0
>> * pari_seadata_small-20090618.p0
>> 
>> The relevant package in archlinux I have are
>> 
>> * community/eclib 20190909-8
>> * community/givaro 4.1.1-1
>> * community/lcalc 1.23-19
>> * community/pari 2.11.3-2
>> * community/pari-galdata 20080411-2
>> * community/pari-seadata-small 20090618-2
>> 
>> Should I suspect that something is wrong with the Sage
>> configure scripts? Or that something is wrong with the packages
>> from archlinux?
>> 
>> Best
>> Vincent
>> 
>> 
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>> 
>> ----
>> David Coudert
>> Equipe-Projet COATI
>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée
>> Université Côte d’Azur, Inria, CNRS, I3S, France
>> http://www-sop.inria.fr/members/David.Coudert
>> 
>> 
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>> 
>> ----
>> David Coudert
>> Equipe-Projet COATI
>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée
>> Université Côte d’Azur, Inria, CNRS, I3S, France
>> http://www-sop.inria.fr/members/David.Coudert
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>> 
>> ----
>> David Coudert
>> Equipe-Projet COATI
>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée
>> Université Côte d’Azur, Inria, CNRS, I3S, France
>> http://www-sop.inria.fr/members/David.Coudert
>> 
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>> 
>> ----
>> David Coudert
>> Equipe-Projet COATI
>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée
>> Université Côte d’Azur, Inria, CNRS, I3S, France
>> http://www-sop.inria.fr/members/David.Coudert
>> 
>> 
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>> David Coudert
>> Equipe-Projet COATI
>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée
>> Université Côte d’Azur, Inria, CNRS, I3S, France
>> http://www-sop.inria.fr/members/David.Coudert
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>> David Coudert
>> Equipe-Projet COATI
>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée
>> Université Côte d’Azur, Inria, CNRS, I3S, France
>> http://www-sop.inria.fr/members/David.Coudert
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>> 
>> ----
>> David Coudert
>> Equipe-Projet COATI
>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée
>> Université Côte d’Azur, Inria, CNRS, I3S, France
>> http://www-sop.inria.fr/members/David.Coudert
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>> 
>> ----
>> David Coudert
>> Equipe-Projet COATI
>> Centre de Recherche INRIA Sophia Antipolis - Méditerranée
>> Université Côte d’Azur, Inria, CNRS, I3S, France
>> http://www-sop.inria.fr/members/David.Coudert
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----
David Coudert
Equipe-Projet COATI
Centre de Recherche INRIA Sophia Antipolis - Méditerranée
Université Côte d’Azur, Inria, CNRS, I3S, France
http://www-sop.inria.fr/members/David.Coudert

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