Doctest Errors and processes keep on being bussy after doctest finished
Hi, building sage 6.0 from scratch on Fedora 18, Phenom II X4,
First of all, after ptestlong finished, their are still 6 processes with
the same name '"gap-static-linux-i686" running, consuming 100% of (all 4)
CPU power. This is not the first time and happens always after installing
sage and performing ptestlong, earlier it may was not 6 but 4 processes
which kept on running.
Furthermore, the following errors occured while running ptestlong
Final message:
----------------------------------------------------------------------
sage -t --long src/sage/groups/matrix_gps/coxeter_group.py # 4 doctests
failed
sage -t --long src/sage/tests/cmdline.py # 1 doctest failed
sage -t --long src/sage/combinat/root_system/coxeter_group.py # 7 doctests
failed
----------------------------------------------------------------------
Total time for all tests: 12675.3 seconds
cpu time: 8692.9 seconds
cumulative wall time: 48318.1 seconds
make: *** [ptestlong] Error 1
And here are the relevant parts of the logfile:
sage -t --long src/sage/groups/matrix_gps/coxeter_group.py
**********************************************************************
File "src/sage/groups/matrix_gps/coxeter_group.py", line 326, in
sage.groups.matrix_gps.coxeter_group.CoxeterMatrixGroup.index_set
Failed example:
W = CoxeterGroup(['H',3])
Exception raised:
Traceback (most recent call last):
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 480, in _run
self.execute(example, compiled, test.globs)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 839, in execute
exec compiled in globs
File "<doctest
sage.groups.matrix_gps.coxeter_group.CoxeterMatrixGroup.index_set[4]>",
line 1, in <module>
W = CoxeterGroup(['H',Integer(3)])
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/combinat/root_system/coxeter_group.py",
line 145, in CoxeterGroup
return CoxeterGroupAsPermutationGroup(cartan_type)
File "classcall_metaclass.pyx", line 330, in
sage.misc.classcall_metaclass.ClasscallMetaclass.__call__
(sage/misc/classcall_metaclass.c:1224)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/combinat/root_system/coxeter_group.py",
line 188, in __classcall__
return super(CoxeterGroupAsPermutationGroup,
cls).__classcall__(cls, cartan_type)
File "cachefunc.pyx", line 1030, in
sage.misc.cachefunc.WeakCachedFunction.__call__ (sage/misc/cachefunc.c:5675)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/structure/unique_representation.py",
line 447, in __classcall__
instance = typecall(cls, *args, **options)
File "classcall_metaclass.pyx", line 518, in
sage.misc.classcall_metaclass.typecall
(sage/misc/classcall_metaclass.c:1586)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/combinat/root_system/coxeter_group.py",
line 210, in __init__
N = self._gap_group.__getattr__("N").sage()
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/interfaces/interface.py",
line 884, in __getattr__
P = self._check_valid()
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/interfaces/expect.py",
line 1321, in _check_valid
raise ValueError, "The %s session in which this object was defined
is no longer running."%P.name()
ValueError: The gap3 session in which this object was defined is no
longer running.
**********************************************************************
File "src/sage/groups/matrix_gps/coxeter_group.py", line 327, in
sage.groups.matrix_gps.coxeter_group.CoxeterMatrixGroup.index_set
Failed example:
W.index_set()
Expected:
(1, 2, 3)
Got:
('x', 'y')
**********************************************************************
File "src/sage/groups/matrix_gps/coxeter_group.py", line 342, in
sage.groups.matrix_gps.coxeter_group.CoxeterMatrixGroup.coxeter_matrix
Failed example:
W = CoxeterGroup(['H',3])
Exception raised:
Traceback (most recent call last):
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 480, in _run
self.execute(example, compiled, test.globs)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 839, in execute
exec compiled in globs
File "<doctest
sage.groups.matrix_gps.coxeter_group.CoxeterMatrixGroup.coxeter_matrix[2]>",
line 1, in <module>
W = CoxeterGroup(['H',Integer(3)])
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/combinat/root_system/coxeter_group.py",
line 145, in CoxeterGroup
return CoxeterGroupAsPermutationGroup(cartan_type)
File "classcall_metaclass.pyx", line 330, in
sage.misc.classcall_metaclass.ClasscallMetaclass.__call__
(sage/misc/classcall_metaclass.c:1224)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/combinat/root_system/coxeter_group.py",
line 188, in __classcall__
return super(CoxeterGroupAsPermutationGroup,
cls).__classcall__(cls, cartan_type)
File "cachefunc.pyx", line 1030, in
sage.misc.cachefunc.WeakCachedFunction.__call__ (sage/misc/cachefunc.c:5675)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/structure/unique_representation.py",
line 447, in __classcall__
instance = typecall(cls, *args, **options)
File "classcall_metaclass.pyx", line 518, in
sage.misc.classcall_metaclass.typecall
(sage/misc/classcall_metaclass.c:1586)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/combinat/root_system/coxeter_group.py",
line 210, in __init__
N = self._gap_group.__getattr__("N").sage()
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/interfaces/interface.py",
line 884, in __getattr__
P = self._check_valid()
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/interfaces/expect.py",
line 1321, in _check_valid
raise ValueError, "The %s session in which this object was defined
is no longer running."%P.name()
ValueError: The gap3 session in which this object was defined is no
longer running.
**********************************************************************
File "src/sage/groups/matrix_gps/coxeter_group.py", line 343, in
sage.groups.matrix_gps.coxeter_group.CoxeterMatrixGroup.coxeter_matrix
Failed example:
W.coxeter_matrix()
Expected:
[1 3 2]
[3 1 5]
[2 5 1]
Got:
[1 3]
[3 1]
**********************************************************************
2 items had failures:
2 of 5 in
sage.groups.matrix_gps.coxeter_group.CoxeterMatrixGroup.coxeter_matrix
2 of 7 in
sage.groups.matrix_gps.coxeter_group.CoxeterMatrixGroup.index_set
[76 tests, 4 failures, 27.61 s]
sage -t --long src/sage/combinat/root_system/coxeter_group.py
**********************************************************************
File "src/sage/combinat/root_system/coxeter_group.py", line 69, in
sage.combinat.root_system.coxeter_group.CoxeterGroup
Failed example:
W
Expected:
Coxeter group over Universal Cyclotomic Field with Coxeter matrix:
[1 3 2]
[3 1 5]
[2 5 1]
Got:
Permutation Group with generators
[(2,6)(3,18)(4,8)(5,9)(7,10)(11,12)(13,14)(17,21)(19,23)(20,24)(22,25)(26,27)(28,29),
(1,4)(2,17)(3,6)(5,7)(9,11)(10,12)(14,15)(16,19)(18,21)(20,22)(24,26)(25,27)(29,30),
(1,16)(2,5)(4,7)(6,9)(8,10)(11,13)(12,14)(17,20)(19,22)(21,24)(23,25)(26,28)(27,29)]
**********************************************************************
File "src/sage/combinat/root_system/coxeter_group.py", line 282, in
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent
Failed example:
s = W.simple_reflections()
Exception raised:
Traceback (most recent call last):
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 480, in _run
self.execute(example, compiled, test.globs)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 839, in execute
exec compiled in globs
File "<doctest
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent[1]>",
line 1, in <module>
s = W.simple_reflections()
File "cachefunc.pyx", line 1775, in
sage.misc.cachefunc.CachedMethodCallerNoArgs.__call__
(sage/misc/cachefunc.c:9548)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/categories/coxeter_groups.py",
line 418, in simple_reflections
return Family(self.index_set(), self.simple_reflection)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/sets/family.py",
line 372, in Family
return FiniteFamily(dict([(i, function(i)) for i in indices]),
File "cachefunc.pyx", line 1501, in
sage.misc.cachefunc.CachedMethodCaller.__call__ (sage/misc/cachefunc.c:8008)
File "cachefunc.pyx", line 2085, in
sage.misc.cachefunc.CachedMethod._instance_call
(sage/misc/cachefunc.c:10530)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/combinat/root_system/coxeter_group.py",
line 266, in reflection
return self(str(self._gap_group.Reflection(i)))
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/interfaces/interface.py",
line 588, in __call__
return self._obj.parent().function_call(self._name, [self._obj] +
list(args), kwds)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/interfaces/gap.py",
line 898, in function_call
['%s=%s'%(key,value.name()) for key, value in kwds.items()])))
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/interfaces/gap.py",
line 570, in eval
result = Expect.eval(self, input_line, **kwds)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/interfaces/expect.py",
line 1208, in eval
for L in code.split('\n') if L != ''])
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/interfaces/gap.py",
line 771, in _eval_line
raise RuntimeError, message
RuntimeError: Gap3 produced error output
Error, Variable: 'Reflection' must have a value
executing Reflection(sage4,sage5);
**********************************************************************
File "src/sage/combinat/root_system/coxeter_group.py", line 283, in
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent
Failed example:
w = s[1] * s[2] * s[3]
Exception raised:
Traceback (most recent call last):
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 480, in _run
self.execute(example, compiled, test.globs)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 839, in execute
exec compiled in globs
File "<doctest
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent[2]>",
line 1, in <module>
w = s[Integer(1)] * s[Integer(2)] * s[Integer(3)]
NameError: name 's' is not defined
**********************************************************************
File "src/sage/combinat/root_system/coxeter_group.py", line 284, in
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent
Failed example:
w.has_descent(3)
Exception raised:
Traceback (most recent call last):
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 480, in _run
self.execute(example, compiled, test.globs)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 839, in execute
exec compiled in globs
File "<doctest
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent[3]>",
line 1, in <module>
w.has_descent(Integer(3))
NameError: name 'w' is not defined
**********************************************************************
File "src/sage/combinat/root_system/coxeter_group.py", line 286, in
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent
Failed example:
[ w.has_descent(i) for i in [1,2,3] ]
Exception raised:
Traceback (most recent call last):
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 480, in _run
self.execute(example, compiled, test.globs)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 839, in execute
exec compiled in globs
File "<doctest
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent[4]>",
line 1, in <module>
[ w.has_descent(i) for i in
[Integer(1),Integer(2),Integer(3)] ]
NameError: name 'w' is not defined
**********************************************************************
File "src/sage/combinat/root_system/coxeter_group.py", line 288, in
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent
Failed example:
[ w.has_descent(i, side = 'left') for i in [1,2,3] ]
Exception raised:
Traceback (most recent call last):
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 480, in _run
self.execute(example, compiled, test.globs)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 839, in execute
exec compiled in globs
File "<doctest
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent[5]>",
line 1, in <module>
[ w.has_descent(i, side = 'left') for i in
[Integer(1),Integer(2),Integer(3)] ]
NameError: name 'w' is not defined
**********************************************************************
File "src/sage/combinat/root_system/coxeter_group.py", line 290, in
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent
Failed example:
[ w.has_descent(i, positive = True) for i in [1,2,3] ]
Exception raised:
Traceback (most recent call last):
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 480, in _run
self.execute(example, compiled, test.globs)
File
"/scratch/userdata/sage-6.0/local/lib/python2.7/site-packages/sage/doctest/forker.py",
line 839, in execute
exec compiled in globs
File "<doctest
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent[6]>",
line 1, in <module>
[ w.has_descent(i, positive = True) for i in
[Integer(1),Integer(2),Integer(3)] ]
NameError: name 'w' is not defined
**********************************************************************
2 items had failures:
1 of 17 in sage.combinat.root_system.coxeter_group.CoxeterGroup
6 of 8 in
sage.combinat.root_system.coxeter_group.CoxeterGroupAsPermutationGroup.Element.has_descent
[28 tests, 7 failures, 49.75 s]
cheers, Georg
On Friday, December 20, 2013 8:14:37 PM UTC+1, Volker Braun wrote:
>
> Just to clarify, 6.0 is definitely released!
>
> We'll try to do a better job with the release announcements in the future.
> If anybody got something out of the changelog scripts please post here! Raw
> git log follows:
>
> $ git log --author "Release Manager" 6.0 --oneline
> 3cf92ba Trac #15529: Maxima takes version information from git repo
> 4ab6eba Trac #13015: Metaticket: revamp workflow / switch to git
> ab077f0 Trac #15509: sage-fix-pkg-checksums can break when not run from
> bash
> 15d89e9 Trac #15527: Automatically pick up version for bdist
> 40ed717 Trac #15526: banner is not updated
> 9531df5 Trac #15517: Run sage-upgrade *outside* of the Sage shell
> 3fc4257 Trac #15524: sage-fix-pkg-checksums does not preserve tarball name
> c23ec37 Trac #14715: Gracefully break upgrading from earlier versions
> 93cd08f Trac #15440: Random spaces injected into Maxima pexpect output
> ef54138 Trac #14968: Store actual tarball name in pkg metadata.
> 9d08fd5 Trac #15472: Fixes for the source tarball generation (sage -sdist)
> a73f7ca Trac #15469: Symmetrica spkg-check fails due to whitespace
> ee17952 Trac #15468: update to latest upstream git
> 608159c Trac #15465: Allow using Sage without dev/git
> e1a7d2a Trac #15458: "make distclean" fails on Solaris
> 2746553 Trac #15436: Cksum uses tabs instead of spaces, breaking
> sage-spkg's regex
> efc62c7 Trac #15430: Enable cython caching
> 3ec5f9a Trac #15420: Borken git doctests.
> 9941537 Trac #15401: Build git without gettext if necessary, spkg-check
> sanity
> da1f185 Trac #15221: Sage should re-build packages when versions change.
> 40e09fe Trac #15222: "make download" target for sage
> 495531d Trac #15241: Add editor- and os-specific temporary files to
> .gitignore
> 3e80db8 Trac #14962: make sure all optional packages work in the git
> repository
> f0f8c88 Trac #15302: Update misc. optional spkgs to the new directory
> layout
> 723ec79 Trac #15263: update database_symbolic_data to new git workflow
> 896a8bb Trac #14482: create the new development scripts/library
> 1c27b28 Trac #14481: document the new workflow
> 816eb49 Trac #14480: switch sage to the new directory layout
>
>
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