Hi, On Tuesday, September 10, 2019 at 2:51:27 PM UTC+2, Dima Pasechnik wrote: > > On Tue, Sep 10, 2019 at 1:36 PM Mariel Supina > <mariel...@berkeley.edu <javascript:>> wrote: > > > > On Debian stretch, I get a compilation error making sage 8.9.beta9. The > problem is in the package "cypari", the relevant log is attached: > > Are you upgrading? Building from scratch? >
I am building from scratch with python3. > > The interesting line is > > error: [Errno 2] No such file or directory: '/usr/share/pari/pari.desc' > > This appears to be related to > https://trac.sagemath.org/ticket/28242 > Perhaps it ought to be improved. > The compilation used to work fine on the machines, so that could be it? > > It looks like you're trying to use a system installation of Pari/GP, > rather > than build Sage's Pari. What parts of Pari (Pari-related packages?) > do you have on your Debian system? > The computer on which I try to compile is maintained by my department's IT, so I am not completely aware of all the packages that might or might not be installed. How can I figure out which pari (and which packages) are installed? > > Anyhow, Pari in Stretch is too old, but you should be able to use the > one from backports: > > https://packages.debian.org/stretch-backports/libpari-dev > <https://www.google.com/url?q=https%3A%2F%2Fpackages.debian.org%2Fstretch-backports%2Flibpari-dev&sa=D&sntz=1&usg=AFQjCNHOZ3kfzejSaSD_I-8EBzCVg_IW6w> I am afraid that I do not have the rights to install libpari systemwide. Hmm. > > > Thanks > Dima > > > > Found local metadata for cypari-2.1.1 > > Attempting to download package cypari2-2.1.1.tar.gz from mirrors > > > https://mirror.koddos.net/sagemath/spkg/upstream/cypari/cypari2-2.1.1.tar.gz > > [......................................................................] > > cypari-2.1.1 > > ==================================================== > > Setting up build directory for cypari-2.1.1 > > Finished extraction > > Applying patches from ../patches... > > Applying ../patches/trashcan.patch > > patching file cypari2/gen.pxd > > patching file cypari2/gen.pyx > > Hunk #1 succeeded at 141 (offset 6 lines). > > patching file cypari2/pari_instance.pyx > > **************************************************** > > Host system: > > Linux ural 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) > x86_64 GNU/Linux > > **************************************************** > > C compiler: gcc > > C compiler version: > > Using built-in specs. > > COLLECT_GCC=gcc > > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper > > Target: x86_64-linux-gnu > > Configured with: ../src/configure -v --with-pkgversion='Debian > 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs > --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr > --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared > --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext > --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ > --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes > --with-default-libstdcxx-abi=new --enable-gnu-unique-object > --disable-vtable-verify --enable-libmpx --enable-plugin > --enable-default-pie --with-system-zlib --disable-browser-plugin > --enable-java-awt=gtk --enable-gtk-cairo > --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home > --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 > --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 > --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar > --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch > --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 > --enable-multilib --with-tune=generic --enable-checking=release > --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu > > Thread model: posix > > gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1) > > **************************************************** > > Package 'cypari' is currently not installed > > No legacy uninstaller found for 'cypari'; nothing to do > > Installing cypari-2.1.1 > > Installing package cypari2 using pip2 > > Ignoring indexes: https://pypi.org/simple > > Created temporary directory: /tmp/pip-ephem-wheel-cache-EMVpJz > > Created temporary directory: /tmp/pip-req-tracker-wfmzIV > > Created requirements tracker '/tmp/pip-req-tracker-wfmzIV' > > Created temporary directory: /tmp/pip-install-HkyCL2 > > Processing > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > > Created temporary directory: /tmp/pip-req-build-MoH_HZ > > Added > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src to > build tracker '/tmp/pip-req-tracker-wfmzIV' > > Running setup.py (path:/tmp/pip-req-build-MoH_HZ/setup.py) egg_info > for package from > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > > Running command python setup.py egg_info > > running egg_info > > creating pip-egg-info/cypari2.egg-info > > writing requirements to pip-egg-info/cypari2.egg-info/requires.txt > > writing pip-egg-info/cypari2.egg-info/PKG-INFO > > writing top-level names to > pip-egg-info/cypari2.egg-info/top_level.txt > > writing dependency_links to > pip-egg-info/cypari2.egg-info/dependency_links.txt > > writing manifest file 'pip-egg-info/cypari2.egg-info/SOURCES.txt' > > error: [Errno 2] No such file or directory: > '/usr/share/pari/pari.desc' > > Cleaning up... > > Removing source in /tmp/pip-req-build-MoH_HZ > > Removed > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > from build tracker '/tmp/pip-req-tracker-wfmzIV' > > Removed build tracker '/tmp/pip-req-tracker-wfmzIV' > > Command "python setup.py egg_info" failed with error code 1 in > /tmp/pip-req-build-MoH_HZ/ > > Exception information: > > Traceback (most recent call last): > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py", > > line 143, in main > > status = self.run(options, args) > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/commands/install.py", > > line 318, in run > > resolver.resolve(requirement_set) > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 102, in resolve > > self._resolve_one(requirement_set, req) > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 256, in _resolve_one > > abstract_dist = self._get_abstract_dist_for(req_to_install) > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 209, in _get_abstract_dist_for > > self.require_hashes > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", > > line 298, in prepare_linked_requirement > > abstract_dist.prep_for_dist(finder, self.build_isolation) > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", > > line 126, in prep_for_dist > > self.req.run_egg_info() > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", > > line 473, in run_egg_info > > command_desc='python setup.py egg_info') > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/utils/misc.py", > > line 705, in call_subprocess > > % (command_desc, proc.returncode, cwd)) > > InstallationError: Command "python setup.py egg_info" failed with error > code 1 in /tmp/pip-req-build-MoH_HZ/ > > Error: installing with pip2 failed > > > ******************************************************************************** > > > > Error installing cypari-2.1.1 > > > ******************************************************************************** > > > > > > real 0m1.345s > > user 0m1.088s > > sys 0m0.184s > > ************************************************************************ > > Error installing package cypari-2.1.1 > > ************************************************************************ > > Please email sage-devel (http://groups.google.com/group/sage-devel) > > explaining the problem and including the log file > > /srv/public/shared/sage/logs/pkgs/cypari-2.1.1.log > > Describe your computer, operating system, etc. > > If you want to try to fix the problem yourself, *don't* just cd to > > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1 and type > 'make' or whatever is appropriate. > > Instead, the following commands setup all environment variables > > correctly and load a subshell for you to debug the error: > > (cd '/srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1' && > '/srv/public/shared/sage/sage' --sh) > > When you are done debugging, you can type "exit" to leave the subshell. > > ************************************************************************ > > Found local metadata for cypari-2.1.1 > > Using cached file /srv/public/shared/sage/upstream/cypari2-2.1.1.tar.gz > > cypari-2.1.1 > > ==================================================== > > Setting up build directory for cypari-2.1.1 > > Finished extraction > > Applying patches from ../patches... > > Applying ../patches/trashcan.patch > > patching file cypari2/gen.pxd > > patching file cypari2/gen.pyx > > Hunk #1 succeeded at 141 (offset 6 lines). > > patching file cypari2/pari_instance.pyx > > **************************************************** > > Host system: > > Linux ural 4.9.0-9-amd64 #1 SMP Debian 4.9.168-1+deb9u4 (2019-07-19) > x86_64 GNU/Linux > > **************************************************** > > C compiler: gcc > > C compiler version: > > Using built-in specs. > > COLLECT_GCC=gcc > > COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/6/lto-wrapper > > Target: x86_64-linux-gnu > > Configured with: ../src/configure -v --with-pkgversion='Debian > 6.3.0-18+deb9u1' --with-bugurl=file:///usr/share/doc/gcc-6/README.Bugs > --enable-languages=c,ada,c++,java,go,d,fortran,objc,obj-c++ --prefix=/usr > --program-suffix=-6 --program-prefix=x86_64-linux-gnu- --enable-shared > --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext > --enable-threads=posix --libdir=/usr/lib --enable-nls --with-sysroot=/ > --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes > --with-default-libstdcxx-abi=new --enable-gnu-unique-object > --disable-vtable-verify --enable-libmpx --enable-plugin > --enable-default-pie --with-system-zlib --disable-browser-plugin > --enable-java-awt=gtk --enable-gtk-cairo > --with-java-home=/usr/lib/jvm/java-1.5.0-gcj-6-amd64/jre --enable-java-home > --with-jvm-root-dir=/usr/lib/jvm/java-1.5.0-gcj-6-amd64 > --with-jvm-jar-dir=/usr/lib/jvm-exports/java-1.5.0-gcj-6-amd64 > --with-arch-directory=amd64 --with-ecj-jar=/usr/share/java/eclipse-ecj.jar > --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch > --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 > --enable-multilib --with-tune=generic --enable-checking=release > --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu > > Thread model: posix > > gcc version 6.3.0 20170516 (Debian 6.3.0-18+deb9u1) > > **************************************************** > > Package 'cypari' is currently not installed > > No legacy uninstaller found for 'cypari'; nothing to do > > Installing cypari-2.1.1 > > Installing package cypari2 using pip2 > > Ignoring indexes: https://pypi.org/simple > > Created temporary directory: /tmp/pip-ephem-wheel-cache-4L98l9 > > Created temporary directory: /tmp/pip-req-tracker-mosN7y > > Created requirements tracker '/tmp/pip-req-tracker-mosN7y' > > Created temporary directory: /tmp/pip-install-AHSkDU > > Processing > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > > Created temporary directory: /tmp/pip-req-build-eMwGZT > > Added > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src to > build tracker '/tmp/pip-req-tracker-mosN7y' > > Running setup.py (path:/tmp/pip-req-build-eMwGZT/setup.py) egg_info > for package from > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > > Running command python setup.py egg_info > > running egg_info > > creating pip-egg-info/cypari2.egg-info > > writing requirements to pip-egg-info/cypari2.egg-info/requires.txt > > writing pip-egg-info/cypari2.egg-info/PKG-INFO > > writing top-level names to > pip-egg-info/cypari2.egg-info/top_level.txt > > writing dependency_links to > pip-egg-info/cypari2.egg-info/dependency_links.txt > > writing manifest file 'pip-egg-info/cypari2.egg-info/SOURCES.txt' > > error: [Errno 2] No such file or directory: > '/usr/share/pari/pari.desc' > > Cleaning up... > > Removing source in /tmp/pip-req-build-eMwGZT > > Removed > file:///srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1/src > from build tracker '/tmp/pip-req-tracker-mosN7y' > > Removed build tracker '/tmp/pip-req-tracker-mosN7y' > > Command "python setup.py egg_info" failed with error code 1 in > /tmp/pip-req-build-eMwGZT/ > > Exception information: > > Traceback (most recent call last): > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/cli/base_command.py", > > line 143, in main > > status = self.run(options, args) > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/commands/install.py", > > line 318, in run > > resolver.resolve(requirement_set) > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 102, in resolve > > self._resolve_one(requirement_set, req) > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 256, in _resolve_one > > abstract_dist = self._get_abstract_dist_for(req_to_install) > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/resolve.py", > > line 209, in _get_abstract_dist_for > > self.require_hashes > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", > > line 298, in prepare_linked_requirement > > abstract_dist.prep_for_dist(finder, self.build_isolation) > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/operations/prepare.py", > > line 126, in prep_for_dist > > self.req.run_egg_info() > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/req/req_install.py", > > line 473, in run_egg_info > > command_desc='python setup.py egg_info') > > File > "/srv/public/shared/sage/local/lib/python2.7/site-packages/pip/_internal/utils/misc.py", > > line 705, in call_subprocess > > % (command_desc, proc.returncode, cwd)) > > InstallationError: Command "python setup.py egg_info" failed with error > code 1 in /tmp/pip-req-build-eMwGZT/ > > Error: installing with pip2 failed > > > ******************************************************************************** > > > > Error installing cypari-2.1.1 > > > ******************************************************************************** > > > > > > real 0m1.313s > > user 0m1.084s > > sys 0m0.176s > > ************************************************************************ > > Error installing package cypari-2.1.1 > > ************************************************************************ > > Please email sage-devel (http://groups.google.com/group/sage-devel) > > explaining the problem and including the log file > > /srv/public/shared/sage/logs/pkgs/cypari-2.1.1.log > > Describe your computer, operating system, etc. > > If you want to try to fix the problem yourself, *don't* just cd to > > /srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1 and type > 'make' or whatever is appropriate. > > Instead, the following commands setup all environment variables > > correctly and load a subshell for you to debug the error: > > (cd '/srv/public/shared/sage/local/var/tmp/sage/build/cypari-2.1.1' && > '/srv/public/shared/sage/sage' --sh) > > When you are done debugging, you can type "exit" to leave the subshell. > > ************************************************************************ > > > > > > On Tuesday, September 3, 2019 at 1:22:40 AM UTC+2, Volker Braun wrote: > >> > >> As always, you can get the latest beta version from the "develop" git > branch. Alternatively, the self-contained source tarball is at > http://www.sagemath.org/download-latest.html > >> > >> > >> bdf4b23d74 (trac/develop, tag: 8.9.beta9) Updated SageMath version to > 8.9.beta9 > >> c631202c12 Trac #28411: refresh the prompt in the installation guide > >> 45482b13f0 Trac #28387: Implement function that returns the balanced > digit representation of an integer > >> 4454ffec0d Trac #28384: py2: UnicodeDecodeError in doctest framework > exception handling > >> 0c8192c3de Trac #28366: Lattice precision timing test fails on Windows > 7 due to low-ish clock resolution > >> 5e1b351a89 Trac #28274: EnumeratedFamily should use integers as keys > >> ec9715bb88 Trac #28172: Profile of a Finite Permutation Group > >> dcf58df8b5 Trac #28154: SciPy: patch for missing coding lines in some > source files > >> 82d75fd335 Trac #27917: Standardize doctest headers > >> 04d5aab185 Trac #25817: RuntimeError: Encountered operator mismatch in > maxima-to-sr translation, integrate > >> 45314bcbcf Trac #23639: Strange errors with roots() of polynomials over > polynomial rings > >> f29cee985f Trac #28419: new pyflakes miscellanous cleanup > >> 77bddf472a Trac #28417: removed deprecated stuff in integer_mod > >> c565a3aa0a Trac #28412: upgrade Pynac to 0.7.26 > >> 2e47b34ab8 Trac #28408: fixing a few invalid escape sequences > >> 877d26294b Trac #28407: py3: fix quantum_group_gap and graph_latex > >> 3db8be3dc0 Trac #28399: remove deprecated things in integer.pyx > >> 6a837c5ea6 Trac #27818: Meet-subsemilattice for lattices > >> 2920f66a0e Trac #27798: Add `backend` option to associahedron and flow > polytope > >> 98f3199887 Trac #27587: Follow up to #25680: Fix tempfile handling in > doctests > >> 0719be21c2 Trac #27473: Matrix inversion fails over a Laurent series > ring > >> 842a3dcd41 Trac #27444: Expose multithreaded fflas-ffpack features > >> cee95e6b38 Trac #28404: Sign of hypergeometric motives is sometimes > wrong > >> af8bf5ead8 Trac #28400: fixing a few roles > >> 1cdf4955c6 Trac #28398: _richcmp_ for quaternion algebra elements > >> abb2397287 Trac #28397: fix some wrong doctests that were not run > >> 2465a9e494 Trac #28396: faster Möbius matrix for Hasse diagrams > >> 4b4b5bf81b Trac #28395: Bug in is_weil_polynomial > >> 77466c5716 Trac #28393: add self-tests for polymake > >> a7f0a353e5 Trac #28391: dependencies file for jupymake > >> e7a3ec0d98 Trac #28377: polymake interface broken with "non-standard" > quadratic fields > >> a535670711 Trac #28339: Random failure in src/sage/interfaces/expect.py > >> f34f77e4da Trac #28271: Implement LexM traversal > >> 304feb1626 Trac #28229: Generalized shifted prime tableau > >> e570374675 Trac #27689: Implement is_pyramid, is_bipyramid, is_prism > for polytopes > >> addde7bcc7 Trac #28380: bump up the version of givaro in > spkg-configure.m4 > >> 8f1c30f031 Trac #28403: py3: crypto/block_cipher/present.py doctest > failures > >> 0ae7ffa669 Trac #25727: Prevent giac from giving localized output > >> 109c1bd6c1 Trac #28060: Extensions of finite fields embeddings: we have > inverse image but `inverse_image` throws `NotImplemented` > >> 0c5c45c0cf Trac #27937: Fix for functorial construction of monoid > algebras > >> fee35bf412 Trac #27851: Convert sqrt(D) to UCF > >> 3b7ef2c62c Trac #27831: Small fix for is_symmetric for matrices over > CDF > >> 8f76f4d242 Trac #27760: Generalized Permutohedra and type H4 4-uniform > polytopes > >> 67de66d92d Trac #27096: Bug in Buchberger algorithm over Tate algebra > >> 6b8839d39f Trac #25823: maxima segfaults on integral computation > >> 4583b4056e (tag: 8.9.beta8, trac/develop) Updated SageMath version to > 8.9.beta8 > >> > > -- > > You received this message because you are subscribed to the Google > Groups "sage-release" group. > > To unsubscribe from this group and stop receiving emails from it, send > an email to sage-r...@googlegroups.com <javascript:>. > > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/78651b01-df14-4f2f-826c-d7de01833101%40googlegroups.com. > > > -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/71e7386e-a8bf-4a26-b446-706c65f0a91a%40googlegroups.com.
