Le mardi 14 juillet 2020 16:47:04 UTC+2, Dima Pasechnik a écrit : > > ./sage -b > > should make jupyter notebook work again >
Indeed... This also allows to create a Sage or Gap sheet in the systemwide Jupyter. the Pari kernel still fails. BTW : the singular kernel does not qwork in euther Sage's or systemide Jupyter , complaining of : [I 17:03:33.105 NotebookApp] Creating new notebook in [I 17:03:34.029 NotebookApp] Kernel started: 4e45ede1-0b60-4cd6-be87-e8cc02f05161 /usr/bin/python: No module named jupyter_kernel_singular [I 17:03:37.030 NotebookApp] KernelRestarter: restarting kernel (1/5), new random ports /usr/bin/python: No module named jupyter_kernel_singular [I 17:03:40.038 NotebookApp] KernelRestarter: restarting kernel (2/5), new random ports /usr/bin/python: No module named jupyter_kernel_singular [I 17:03:43.046 NotebookApp] KernelRestarter: restarting kernel (3/5), new random ports /usr/bin/python: No module named jupyter_kernel_singular [I 17:03:46.055 NotebookApp] KernelRestarter: restarting kernel (4/5), new random ports /usr/bin/python: No module named jupyter_kernel_singular [W 17:03:49.063 NotebookApp] KernelRestarter: restart failed [W 17:03:49.064 NotebookApp] Kernel 4e45ede1-0b60-4cd6-be87-e8cc02f05161 died, removing from map. [W 17:04:34.108 NotebookApp] Timeout waiting for kernel_info reply from 4e45ede1-0b60-4cd6-be87-e8cc02f05161 [E 17:04:34.110 NotebookApp] Error opening stream: HTTP 404: Not Found (Kernel does not exist: 4e45ede1-0b60-4cd6-be87-e8cc02f05161) in Sage's jupyter. see https://trac.sagemath.org/ticket/30123 > I pointed your answer in this ticket. Thanks a lot ! On Tue, Jul 14, 2020 at 3:44 PM Emmanuel Charpentier <emanuel.c...@gmail.com> > wrote: > >> On Debian testing running on ore i7 + 16 GB RAM, upgrading a rebuilt Sage >> 9.2.beta4 to 9.2.beta5 and running ptestlong~ gives one transient >> timeout and three permanent errors: >> File Result P/T >> src/sage/tests/parigp.py Timed out T >> src/sage/rings/complex_arb.pyx 6 doctests failed P >> src/sage/tests/gap_packages.py 1 doctest failed P >> src/sage/rings/real_arb.pyx 2 doctests failed P >> >> Those errors are identical to those already reported for beta2 and beta4. >> >> Furthermore, the jupyter notebook, which worked until rebuilding >> 9.2.beta4, is now somehow broken: >> >> harpent@zen-book-flip:~$ sage -n jupyter >> ┌────────────────────────────────────────────────────────────────────┐ >> │ SageMath version 9.2.beta5, Release Date: 2020-07-12 │ >> │ Using Python 3.7.3. Type "help()" for help. │ >> └────────────────────────────────────────────────────────────────────┘ >> ┏━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┓ >> ┃ Warning: this is a prerelease version, and it may be unstable. ┃ >> ┗━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━┛ >> Please wait while the Sage Jupyter Notebook server starts... >> [I 15:55:11.828 NotebookApp] Using MathJax: nbextensions/mathjax/MathJax.js >> [I 15:55:12.097 NotebookApp] The port 8888 is already in use, trying another >> port. >> [I 15:55:12.106 NotebookApp] Serving notebooks from local directory: >> /home/charpent >> [I 15:55:12.106 NotebookApp] The Jupyter Notebook is running at: >> [I 15:55:12.106 NotebookApp] >> http://localhost:8889/?token=8d1b867d9e40a773d742265910124cc9653e6dd28e35df52 >> [I 15:55:12.106 NotebookApp] Use Control-C to stop this server and shut down >> all kernels (twice to skip confirmation). >> [C 15:55:12.137 NotebookApp] >> >> To access the notebook, open this file in a browser: >> file:///run/user/1000/jupyter/nbserver-734665-open.html >> Or copy and paste one of these URLs: >> >> http://localhost:8889/?token=8d1b867d9e40a773d742265910124cc9653e6dd28e35df52 >> >> Attempt to create a Python 3 sheet : >> >> [I 15:55:21.557 NotebookApp] Creating new notebook in >> [W 15:55:22.259 NotebookApp] 404 GET >> /nbextensions/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML-full,Safe&delayStartupUntil=configured >> (::1) 26.95ms >> referer=http://localhost:8889/notebooks/Untitled.ipynb?kernel_name=python3 >> >> Attempt to create a Sage sheet : >> >> [I 15:55:38.201 NotebookApp] Creating new notebook in >> [W 15:55:38.610 NotebookApp] 404 GET >> /nbextensions/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML-full,Safe&delayStartupUntil=configured >> (::1) 4.22ms >> referer=http://localhost:8889/notebooks/Untitled1.ipynb?kernel_name=sagemath >> >> Attempt to create a Gap sheet : >> >> [I 15:56:23.326 NotebookApp] Creating new notebook in >> [W 15:56:23.715 NotebookApp] 404 GET >> /nbextensions/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML-full,Safe&delayStartupUntil=configured >> (::1) 5.99ms >> referer=http://localhost:8889/notebooks/Untitled2.ipynb?kernel_name=gap >> >> Attempt to create a Pari sheet : >> >> [I 15:57:23.483 NotebookApp] Creating new notebook in >> [W 15:57:23.877 NotebookApp] 404 GET >> /nbextensions/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML-full,Safe&delayStartupUntil=configured >> (::1) 5.48ms >> referer=http://localhost:8889/notebooks/Untitled3.ipynb?kernel_name=pari_jupyter >> >> Attempt to create an R sheet (IR kernel is a systemwide Jupyter kernel, >> symlinked into Sage) : >> >> [I 15:57:52.365 NotebookApp] Creating new notebook in >> [W 15:57:52.762 NotebookApp] 404 GET >> /nbextensions/mathjax/MathJax.js?config=TeX-AMS-MML_HTMLorMML-full,Safe&delayStartupUntil=configured >> (::1) 5.52ms >> referer=http://localhost:8889/notebooks/Untitled4.ipynb?kernel_name=ir >> [W 15:58:50.787 NotebookApp] delete /Untitled.ipynb >> [W 15:58:50.791 NotebookApp] delete /Untitled2.ipynb >> [W 15:58:50.794 NotebookApp] delete /Untitled1.ipynb >> [W 15:58:50.797 NotebookApp] delete /Untitled3.ipynb >> [W 15:58:50.800 NotebookApp] delete /Untitled4.ipynb >> [I 15:58:54.627 NotebookApp] Shutting down on /api/shutdown request. >> [I 15:58:54.627 NotebookApp] Shutting down 0 kernels >> >> In all these cases, the browser (Debian’s chromium) create a new >> tab, that remains blank and inactive until (manually) closed. >> >> In contrast, the system Jupyter notebook, using symlinked kernels, >> can create and use active Sagemath and Gap sheets ; the Pari kernel fails >> to start its interpreter, however : >> >> charpent@zen-book-flip:~$ jupyter notebook >> [I 16:21:06.627 NotebookApp] The port 8888 is already in use, trying another >> port. >> [I 16:21:06.632 NotebookApp] Serving notebooks from local directory: >> /home/charpent >> [I 16:21:06.632 NotebookApp] The Jupyter Notebook is running at: >> [I 16:21:06.632 NotebookApp] >> http://localhost:8889/?token=a6b03587590b0615808a11b8c65e98554a5896f701a3bf78 >> [I 16:21:06.632 NotebookApp] or >> http://127.0.0.1:8889/?token=a6b03587590b0615808a11b8c65e98554a5896f701a3bf78 >> [I 16:21:06.632 NotebookApp] Use Control-C to stop this server and shut down >> all kernels (twice to skip confirmation). >> [C 16:21:06.650 NotebookApp] >> >> To access the notebook, open this file in a browser: >> >> file:///home/charpent/.local/share/jupyter/runtime/nbserver-736070-open.html >> Or copy and paste one of these URLs: >> >> http://localhost:8889/?token=a6b03587590b0615808a11b8c65e98554a5896f701a3bf78 >> or >> http://127.0.0.1:8889/?token=a6b03587590b0615808a11b8c65e98554a5896f701a3bf78 >> [I 16:21:22.870 NotebookApp] Creating new notebook in >> >> Successful creation (modulo minor booboos) of a Sagemath sheet : >> >> [I 16:21:23.866 NotebookApp] Kernel started: >> e462e630-07a7-418c-b3c9-be44595bae8f >> [I 16:21:25.256 NotebookApp] Adapting from protocol version 5.1 (kernel >> e462e630-07a7-418c-b3c9-be44595bae8f) to 5.3 (client). >> [IPKernelApp] ERROR | No such comm target registered: jupyter.widget.version >> [IPKernelApp] ERROR | No such comm target registered: jupyter.widget.version >> >> Successful creation (modulo minor booboos) of a Gap sheet : >> >> [I 16:21:39.302 NotebookApp] Creating new notebook in >> [I 16:21:40.193 NotebookApp] Kernel started: >> 1f2c926b-0da9-42e5-b386-c4480ae3d5a3 >> [IPKernelApp] ERROR | ('starting GAP: gap',) >> [I 16:21:41.794 NotebookApp] Adapting from protocol version 5.1 (kernel >> 1f2c926b-0da9-42e5-b386-c4480ae3d5a3) to 5.3 (client). >> [IPKernelApp] WARNING | Unknown message type: 'comm_open' >> [IPKernelApp] WARNING | Unknown message type: 'comm_open' >> [IPKernelApp] ERROR | ('command JUPYTER_RunCommand("1+2; ;");',) >> [IPKernelApp] ERROR | ('reply {"result" : {"name" : "stdout","text" : >> "3"},"status" : "ok"}',) >> [IPKernelApp] ERROR | ('json part: {"result" : {"name" : "stdout","text" : >> "3"},"status" : "ok"}',) >> [IPKernelApp] ERROR | ('rest part: ',) >> >> Unsuccessful creation of a Pari sheet (the sheet is created and seems >> active, but the kernel doesn’t start) : >> >> [I 16:22:55.964 NotebookApp] Creating new notebook in >> [I 16:22:56.903 NotebookApp] Kernel started: >> 5e902bf3-eb88-42f3-b830-ab3386b66372 >> /usr/bin/python3: No module named PARIKernel >> [I 16:22:59.903 NotebookApp] KernelRestarter: restarting kernel (1/5), new >> random ports >> /usr/bin/python3: No module named PARIKernel >> [I 16:23:02.908 NotebookApp] KernelRestarter: restarting kernel (2/5), new >> random ports >> /usr/bin/python3: No module named PARIKernel >> [I 16:23:05.914 NotebookApp] KernelRestarter: restarting kernel (3/5), new >> random ports >> /usr/bin/python3: No module named PARIKernel >> [I 16:23:08.920 NotebookApp] KernelRestarter: restarting kernel (4/5), new >> random ports >> /usr/bin/python3: No module named PARIKernel >> [W 16:23:11.925 NotebookApp] KernelRestarter: restart failed >> [W 16:23:11.926 NotebookApp] Kernel 5e902bf3-eb88-42f3-b830-ab3386b66372 >> died, removing from map. >> [I 16:23:24.665 NotebookApp] Saving file at /Untitled.ipynb >> [I 16:23:40.661 NotebookApp] Saving file at /Untitled1.ipynb >> [W 16:23:56.964 NotebookApp] Timeout waiting for kernel_info reply from >> 5e902bf3-eb88-42f3-b830-ab3386b66372 >> [E 16:23:56.965 NotebookApp] Error opening stream: HTTP 404: Not Found >> (Kernel does not exist: 5e902bf3-eb88-42f3-b830-ab3386b66372) >> [W 16:23:58.014 NotebookApp] 404 GET >> /api/kernels/5e902bf3-eb88-42f3-b830-ab3386b66372/channels?session_id=1834273a3dab45cdb9e19c7648034db2 >> (::1): Kernel does not exist: 5e902bf3-eb88-42f3-b830-ab3386b66372 >> [W 16:23:58.134 NotebookApp] 404 GET >> /api/kernels/5e902bf3-eb88-42f3-b830-ab3386b66372/channels?session_id=1834273a3dab45cdb9e19c7648034db2 >> (::1) 122.97ms referer=None >> [W 16:24:00.152 NotebookApp] Replacing stale connection: >> 5e902bf3-eb88-42f3-b830-ab3386b66372:1834273a3dab45cdb9e19c7648034db2 >> [W 16:24:10.322 NotebookApp] 410 DELETE >> /api/sessions/f70aa579-9aaf-42e7-97a1-c6f34210d33c (::1): Kernel deleted >> before session >> [W 16:24:10.323 NotebookApp] Kernel deleted before session >> [W 16:24:10.323 NotebookApp] 410 DELETE >> /api/sessions/f70aa579-9aaf-42e7-97a1-c6f34210d33c (::1) 2.21ms >> referer=http://localhost:8889/notebooks/Untitled2.ipynb?kernel_name=pari_jupyter >> [I 16:24:19.946 NotebookApp] Starting buffering for >> 1f2c926b-0da9-42e5-b386-c4480ae3d5a3:bc7e5478bf2d4ffc9356a9ceb165f180 >> [I 16:24:19.951 NotebookApp] Kernel shutdown: >> 1f2c926b-0da9-42e5-b386-c4480ae3d5a3 >> [I 16:24:25.634 NotebookApp] Starting buffering for >> e462e630-07a7-418c-b3c9-be44595bae8f:0fb85877a57b42debd5f4d4ca8f9aa9c >> [I 16:24:25.640 NotebookApp] Kernel shutdown: >> e462e630-07a7-418c-b3c9-be44595bae8f >> [W 16:24:55.592 NotebookApp] delete /Untitled.ipynb >> [W 16:24:55.604 NotebookApp] delete /Untitled1.ipynb >> [W 16:24:55.606 NotebookApp] delete /Untitled2.ipynb >> [I 16:25:00.491 NotebookApp] Shutting down on /api/shutdown request. >> [I 16:25:00.492 NotebookApp] Shutting down 0 kernels >> >> FWIW : >> >> charpent@zen-book-flip:~$ sage -jupyter kernelspec list >> Available kernels: >> gap /usr/local/sage-9/local/share/jupyter/kernels/gap >> pari_jupyter /usr/local/sage-9/local/share/jupyter/kernels/pari_jupyter >> python3 /usr/local/sage-9/local/share/jupyter/kernels/python3 >> sagemath /usr/local/sage-9/local/share/jupyter/kernels/sagemath >> ir /usr/local/share/jupyter/kernels/ir >> charpent@zen-book-flip:~$ jupyter kernelspec list >> Available kernels: >> ir /usr/local/share/jupyter/kernels/ir >> gap /usr/share/jupyter/kernels/gap >> pari_jupyter /usr/share/jupyter/kernels/pari_jupyter >> python3 /usr/share/jupyter/kernels/python3 >> >> HTH, >> >> sagemath /usr/share/jupyter/kernels/sagemath >> >> >> >> Le dimanche 12 juillet 2020 11:22:00 UTC+2, Volker Braun a écrit : >> >> As always, you can get the latest beta version from the "develop" git >>> branch. Alternatively, the self-contained source tarball is at >>> http://www.sagemath.org/download-latest.html >>> >>> 467fbc70a0 (tag: 9.2.beta5, trac/develop) Updated SageMath version to >>> 9.2.beta5 >>> 339b459959 Trac #25624: Latex code generated for the "cases" symbolic >>> function does not get viewed. >>> 3589ab188f Trac #30110: py3: remove doctests tagged py2 in graphs >>> 0e2c306454 Trac #30102: Bug with trivial input in >>> designs.difference_family >>> 66094649c5 Trac #30101: Bug in Groebner basis for Tate algebras >>> fe021b3dcd Trac #30098: Remove remaining __div__ methods >>> f1cc526461 Trac #30089: some details about arm lengths and conjugate in >>> partitions and Macdonald polynomials >>> 02024327a3 Trac #30081: Cleaning and improving consistency in >>> `distances` methods in graph module >>> feb50df138 Trac #30077: get rid of _cmp_ for list_clone >>> 14ae83ba5f Trac #30072: fix some lgtm suggestions >>> 452cdc5f19 Trac #30045: Bug in Reed-Solomon encoder and error-erasure >>> decoder >>> c5474af424 Trac #30016: Combinatorial designs: add function to build >>> biplanes >>> 762e2753eb Trac #29895: move sage.misc.misc.*verbose* to new module >>> sage.misc.verbose >>> 62618754a7 Trac #29638: replace tuples by mpz vectors in free abelian >>> monoids >>> ee5428363d Trac #29629: Ore polynomials >>> cd041d1849 Trac #30113: Fix error handling in sagelib setup.py >>> 13cfd67048 Trac #30037: Added a construction for BIBDs from symmetric >>> BIBDs >>> 31ec7c350d Trac #30029: Implement another nonexistence check for >>> symmetric BIBDs >>> 3baa6aae05 Trac #30020: 1 internet doctest failing in >>> combinat/species/library.py + combinat/tutorial.py >>> 72a9b1c4f8 Trac #30011: Remove sage_setup/fpickle_setup.py >>> a212503167 Trac #30001: Update sphinx to 3.1 >>> ed0fbf7078 Trac #29999: sage.rings.polynomial.evaluation: Split into >>> ..._flint and ..._ntl >>> 3117f5ac83 Trac #29958: Too many strong articulation points >>> a0d17af002 Trac #29942: More efficient rank and unrank for >>> Permutations_mset >>> 613162ede1 Trac #29923: Deprecate deprecated sage-cython script harder, >>> remove use of it in the main sage script >>> 16c2328fb8 Trac #29905: test basic properties of polyhedra >>> 04219c9cd4 Trac #29898: vertex facet graph for trivial polyhedra fails >>> 66a033851d Trac #29843: Set up linear transformation with precomputed >>> data if injective >>> 2429e944e4 Trac #29841: Improve obtaining combinatorial polyhedron >>> 24c9b49aa6 Trac #29837: Improvement for incidence matrix of polyhedra >>> 51a5d8f960 Trac #29688: Finite numbers in the signed InfinityRing >>> ironically don't have a sign >>> 2fb40d2b21 Trac #27171: Move file src/bin/sage-maxima.lisp, used by sage >>> at import time, to live inside the package >>> ed49c85844 Trac #21559: Install src/bin scripts by sagelib's setup.py, >>> not make >>> cc19847f77 Trac #29111: src/bin/sage: Delegate handling of options of >>> sage-the-distribution, specifying a subset that is supported by sagelib >>> proper >>> 16e77bf806 Trac #4039: choose one name for partial fraction >>> decompositions >>> 9dec446d9e Trac #29422: DiFUB algorithm for diameter of real >>> (unweighed) directed graphs >>> 92a2618778 Trac #29280: expression parser should support unicode >>> eca054baeb Trac #29278: Callable symbolic expressions should be allowed >>> to have unicode identifiers >>> 1948ce39e4 Trac #27934: Implement efficient all eccentricity computation >>> for undirected graphs >>> 86f0ff5977 Trac #27874: Trace monoid support >>> a6d25fb8a5 Trac #30082: Make ./bootstrap less sensitive to stray files >>> in build/pkgs (affects patchbot operation) >>> d1b661de65 Trac #30064: Fix tox-docker builds broken by #29884 >>> 249771280c Trac #22191: update ECL to 20.4.24 >>> 02b0be1ff8 (tag: 9.2.beta4) Updated SageMath version to 9.2.beta4 >>> >>> >> >> >> -- >> You received this message because you are subscribed to the Google Groups >> "sage-release" group. >> To unsubscribe from this group and stop receiving emails from it, send an >> email to sage-r...@googlegroups.com <javascript:>. >> To view this discussion on the web visit >> https://groups.google.com/d/msgid/sage-release/05e24a2d-ddc4-40ae-9278-dce7c0318060o%40googlegroups.com >> >> <https://groups.google.com/d/msgid/sage-release/05e24a2d-ddc4-40ae-9278-dce7c0318060o%40googlegroups.com?utm_medium=email&utm_source=footer> >> . >> > -- You received this message because you are subscribed to the Google Groups "sage-release" group. 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