Hi again... I'll attach the output of `conda list` to this email.
And... `make setuptools_wheel-no-deps` failed with one more error (an additional log attached): > The following package(s) may have failed to build (not necessarily > during this run of 'make setuptools_wheel-no-deps'): > > * package: pythran-0.14.0 > last build time: Sep 28 19:36 > log file: > > /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/pythran-0.14.0.log > build directory: > /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/pythran-0.14.0 > > * package: fastjsonschema-2.18.0 > last build time: Sep 28 19:36 > log file: > > /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/fastjsonschema-2.18.0.log > build directory: > /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/fastjsonschema-2.18.0 > > * package: sage_conf-10.2.beta5 > last build time: Sep 28 19:36 > log file: > > /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/sage_conf-10.2.beta5.log > > * package: setuptools_wheel-65.6.3 > last build time: Sep 29 10:51 > log file: > > /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/setuptools_wheel-65.6.3.log > build directory: > /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3 > Later I'll read the PR... Kazuyoshi 2023年9月29日(金) 10:36 Matthias Köppe <matthiaskoe...@gmail.com>: > Thanks for sharing the logs for these installation problems; this is > valuable information. > I agree that there seems to be something wrong with the installation of > setuptools in this environment. The command "conda list" could provide > additional helpful information. > You could try if "make setuptools_wheel-no-deps" improves the situation. > > There's also an open PR https://github.com/sagemath/sage/pull/35593 with > fixes for the conda environment, which may be worth trying. > > On Thursday, September 28, 2023 at 6:15:32 PM UTC-7 furutaka....@gmail.com > wrote: > >> Hi... >> >> The only thing I can do is to test the build (and use) of the software, >> and therefore I do so... >> (useless?) >> >> The build of the release on Fedora 38 (x86_64). >> >> 1. With system packages, the build finished w/o any problem. >> >> 2. The build by following the procedure described in >> >> https://doc.sagemath.org/html/en/installation/conda.html#using-conda-to-provide-system-packages-for-the-sage-distribution >> (with environment-optional.yml in place of environment.yml) stopped with >> the following errors while doing `make doc-clean doc-uninstall && make >> -j10`: >> >>> The following package(s) may have failed to build (not necessarily >>> during this run of 'make all-start'): >>> >>> * package: pythran-0.14.0 >>> last build time: Sep 28 19:36 >>> log file: >>> /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/p >>> ythran-0.14.0.log >>> build directory: >>> /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/ >>> pythran-0.14.0 >>> >>> * package: fastjsonschema-2.18.0 >>> last build time: Sep 28 19:36 >>> log file: >>> >>> /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/fastjsonschema-2.18.0.log >>> build directory: >>> /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/fastjsonschema-2.18.0 >>> >>> * package: sage_conf-10.2.beta5 >>> last build time: Sep 28 19:36 >>> log file: >>> >>> /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/sage_conf-10.2.beta5.log >>> >>> >> The former two seemed to be caused because of the lack of setuptools??? >> >> Kazuyoshi >> >> 2023年9月28日(木) 7:56 Volker Braun <vbrau...@gmail.com>: >> >>> As always, you can get the latest beta version from the "develop" git >>> branch. Alternatively, the self-contained source tarball is at >>> http://www.sagemath.org/download-latest.html >>> >>> >>> 1cf0c13e527 (tag: 10.2.beta5, github/develop) Updated SageMath version >>> to 10.2.beta5 >>> b01856309bc gh-36345: `ecm`: Work around build failure with Xcode 15 >>> 2c714728fd0 gh-36339: fix expect interface for newer ptyprocess >>> bb04839a5d5 gh-36338: CI: Merge open blocker PRs in all CI workflows + >>> other improvements >>> a9cb852973a gh-36336: add some class roles for linking Errors in doc >>> 247ea886f0e gh-36335: using more itertools.product >>> f4dc2bc1c8e gh-36330: src/sage/repl/load.py: replace tmp_dir() >>> f6a9058bca4 gh-36327: fix the linter once more >>> 496fb917960 gh-36326: more fixes for E228 and E225 in combinat and some >>> other folders >>> ccf337e8443 gh-36323: src/sage/combinat/words/words.py: replace tmp_dir() >>> feed3d41ef9 gh-36319: build/pkgs/setuptools_scm_git_archive: Remove >>> (obsolete) >>> 22a32e79929 gh-36316: build/pkgs/lrcalc_python: add standard python >>> spkg-configure.m4 >>> 034f1f643b7 gh-36299: Generic implementation of fitting ideal >>> c325311ba47 gh-36284: improve checks >>> 0b5fc8e97a0 gh-36276: Yet more spkg_configure for standard python >>> packages >>> ed478e76787 gh-36275: `sage.graphs.generic_graph`: some care with return >>> ... else statements >>> 602b57114df gh-36270: full pep8 for modular/hecke >>> 4f8a8af331f gh-36267: Change `ipympl`/`pkgconfig`/`widgetsnbextension` >>> to wheel packages, drop build deps >>> 1af7f8f2b6b gh-36234: Use patchelf from the system >>> ce855de61cb gh-36166: Additions to the bigraded Betti number methods >>> 05d7d1dceeb gh-36110: Update Cython to 3.0.2 >>> 5cef467b357 gh-35866: CI build.yml, doc-build.yml: Use output groups >>> 2829cf2182f gh-35537: Fix Sphinx markup in some file >>> 4d3e807ba54 (tag: 10.2.beta4) Updated SageMath version to 10.2.beta4 >>> >>> -- >>> >> You received this message because you are subscribed to the Google Groups >>> "sage-release" group. >>> >> To unsubscribe from this group and stop receiving emails from it, send an >>> email to sage-release...@googlegroups.com. >>> To view this discussion on the web visit >>> https://groups.google.com/d/msgid/sage-release/b58048a8-9158-4c56-ac41-5fbd403938a9n%40googlegroups.com >>> <https://groups.google.com/d/msgid/sage-release/b58048a8-9158-4c56-ac41-5fbd403938a9n%40googlegroups.com?utm_medium=email&utm_source=footer> >>> . >>> >> >> >> -- >> Kazuyoshi Furutaka >> > -- > You received this message because you are subscribed to the Google Groups > "sage-release" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-release+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-release/c52f5482-09d3-4f7e-9b2d-315a5a0ceb95n%40googlegroups.com > <https://groups.google.com/d/msgid/sage-release/c52f5482-09d3-4f7e-9b2d-315a5a0ceb95n%40googlegroups.com?utm_medium=email&utm_source=footer> > . > -- Kazuyoshi Furutaka -- You received this message because you are subscribed to the Google Groups "sage-release" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-release+unsubscr...@googlegroups.com. To view this discussion on the web visit https://groups.google.com/d/msgid/sage-release/CANjERvcpXT7ckMPL1Pz79yxF79LYZgjv_VJrdrkiEcGdDZ%3D9FQ%40mail.gmail.com.
conda-list-20230929.gz
Description: application/gzip
Attempting to download package setuptools-65.6.3.tar.gz from mirrors https://ftp.riken.jp/sagemath/spkg/upstream/setuptools_wheel/setuptools-65.6.3.tar.gz [......................................................................] setuptools_wheel-65.6.3 ==================================================== Setting up build directory for setuptools_wheel-65.6.3 Finished extraction No patch files found in ../patches **************************************************** Host system: Linux peart-furu-or-jp 6.5.5-200.fc38.x86_64 #1 SMP PREEMPT_DYNAMIC Sun Sep 24 15:52:44 UTC 2023 x86_64 GNU/Linux **************************************************** C compiler: /home/furutaka/mambaforge/envs/sage-build/bin/x86_64-conda-linux-gnu-cc C compiler version: Reading specs from /home/furutaka/mambaforge/envs/sage-build/bin/../lib/gcc/x86_64-conda-linux-gnu/12.3.0/specs could not find specs file conda.specs COLLECT_GCC=/home/furutaka/mambaforge/envs/sage-build/bin/x86_64-conda-linux-gnu-cc COLLECT_LTO_WRAPPER=/home/furutaka/mambaforge/envs/sage-build/bin/../libexec/gcc/x86_64-conda-linux-gnu/12.3.0/lto-wrapper Target: x86_64-conda-linux-gnu Configured with: ../configure --prefix=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1685813973314/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho --with-slibdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1685813973314/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --libdir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1685813973314/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib --mandir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1685813973314/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/man --build=x86_64-conda-linux-gnu --host=x86_64-conda-linux-gnu --target=x86_64-conda-linux-gnu --enable-default-pie --enable-languages=c,c++,fortran,objc,obj-c++ --enable-__cxa_atexit --disable-libmudflap --enable-libgomp --disable-libssp --enable-libquadmath --enable-libquadmath-support --enable-libsanitizer --enable-lto --enable-threads=posix --enable-target-optspace --enable-plugin --enable-gold --disable-nls --disable-bootstrap --disable-multilib --enable-long-long --with-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1685813973314/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/x86_64-conda-linux-gnu/sysroot --with-build-sysroot=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1685813973314/_build_env/x86_64-conda-linux-gnu/sysroot --with-gxx-include-dir=/home/conda/feedstock_root/build_artifacts/gcc_compilers_1685813973314/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/x86_64-conda-linux-gnu/include/c++/12.3.0 --with-pkgversion='conda-forge gcc 12.3.0-0' --with-bugurl=https://github.com/conda-forge/ctng-compilers-feedstock/issues/new/choose Thread model: posix Supported LTO compression algorithms: zlib gcc version 12.3.0 (conda-forge gcc 12.3.0-0) **************************************************** Uninstalling existing 'setuptools_wheel' Removing stamp file '/home/furutaka/mambaforge/envs/sage-build/var/lib/sage/installed/setuptools_wheel-65.6.3' Traceback (most recent call last): File "/home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3/src/setup.py", line 87, in <module> dist = setuptools.setup(**setup_params) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3/src/setuptools/__init__.py", line 87, in setup return distutils.core.setup(**attrs) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3/src/setuptools/_distutils/core.py", line 147, in setup _setup_distribution = dist = klass(attrs) ^^^^^^^^^^^^ File "/home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3/src/setuptools/dist.py", line 475, in __init__ _Distribution.__init__( File "/home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3/src/setuptools/_distutils/dist.py", line 283, in __init__ self.finalize_options() File "/home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3/src/setuptools/dist.py", line 898, in finalize_options for ep in sorted(loaded, key=by_order): ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3/src/setuptools/dist.py", line 897, in <lambda> loaded = map(lambda e: e.load(), filtered) ^^^^^^^^ File "/home/furutaka/mambaforge/envs/sage-build/lib/python3.11/importlib/metadata/__init__.py", line 204, in load return functools.reduce(getattr, attrs, module) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ AttributeError: module 'setuptools_scm.integration' has no attribute 'infer_version' ******************************************************************************** Error building a wheel for setuptools_wheel-65.6.3 ******************************************************************************** real 0m3.000s user 0m0.397s sys 0m0.102s ************************************************************************ Error installing package setuptools_wheel-65.6.3 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the log files /home/furutaka/work/sage/sage-10.2.beta5-condaSys/logs/pkgs/setuptools_wheel-65.6.3.log and /home/furutaka/work/sage/sage-10.2.beta5-condaSys/config.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/furutaka/mambaforge/envs/sage-build/var/tmp/sage/build/setuptools_wheel-65.6.3' && '/home/furutaka/work/sage/sage-10.2.beta5-condaSys/sage' --buildsh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
