Hi All, I've tried to build sage 2.11 and 3.0.2 on a linux cluster, Opteron 2212 and 8212 chips (rev F)
[EMAIL PROTECTED] sage-2.11]# uname -a Linux abacus.bw01.math.umass.edu 2.6.9-42.0.3.ELsmp #1 SMP Mon Sep 25 17:24:31 EDT 2006 x86_64 x86_64 x86_64 GNU/Linux After typing make, things go for a while, and then: build/temp.linux-x86_64-2.5/numpy/linalg/lapack_litemodule.o(.text +0x4867): In function `initlapack_lite': build/src.linux-x86_64-2.5/numpy/core/__multiarray_api.h:951: undefined reference to `PyCObject_AsVoidPtr' build/temp.linux-x86_64-2.5/numpy/linalg/lapack_litemodule.o(.text +0x478f): In function `initlapack_lite': numpy/linalg/lapack_litemodule.c:830: undefined reference to `PyErr_SetString' build/temp.linux-x86_64-2.5/numpy/linalg/lapack_litemodule.o(.text +0x485f):numpy/linalg/lapack_litemodule.c:833: undefined reference to `PyDict_SetItemString' /opt/sage-2.11/local/lib/libg2c.a(main.o)(.text+0x155): In function `main': : undefined reference to `MAIN__' collect2: ld returned 1 exit status error: Command "/usr/bin/g77 -g -Wall build/temp.linux-x86_64-2.5/ numpy/linalg/lapack_litemodule.o -L/opt/sage-2.11/local/lib -llapack - lf77blas -lcblas -latlas -lg2c -o build/lib.linux-x86_64-2.5/numpy/ linalg/lapack_lite.so" failed with exit status 1 Error building numpy. real 0m36.738s user 0m34.431s sys 0m2.217s sage: An error occurred while installing numpy-20080104-1.0.4.p2 Please email sage-devel http://groups.google.com/group/sage-devel explaining the problem and send the relevant part of of /opt/sage-2.11/install.log. Describe your computer, operating system, etc. At the end of the log file I see similar info: numpy/linalg/lapack_litemodule.c:830: undefined reference to `PyErr_SetString' build/temp.linux-x86_64-2.5/numpy/linalg/lapack_litemodule.o(.text +0x485f):numpy/linalg/lapack_litemodule.c:833: undefined reference to `PyDict_SetItemString' /opt/sage-2.11/local/lib/libg2c.a(main.o)(.text+0x155): In function `main': : undefined reference to `MAIN__' collect2: ld returned 1 exit status error: Command "/usr/bin/g77 -g -Wall build/temp.linux-x86_64-2.5/ numpy/linalg/lapack_litemodule.o -L/opt/sage-2.11/local/lib -llapack - lf77blas -lcblas -latlas -lg2c -o build/lib.linux-x86_64-2.5/numpy/ linalg/lapack_lite.so" failed with exit status 1 Error building numpy. real 0m36.738s user 0m34.431s sys 0m2.217s sage: An error occurred while installing numpy-20080104-1.0.4.p2 I first tried to build 3.0.2, but thought that there was a rpoblem with pathf90 and pathf95 compilers, so I set the fortran environment variables to blank so SAGE uses its own g95; at least that is what I think should happen. Any help would be appreciated. BTW- I did try a prebuilt binary, and it won't run. Thanks, Hans In case you need them, here are my environment variables: [EMAIL PROTECTED] sage-2.11]# env MASTER_SERVICE_LIST_START=autofs systemimager MANPATH=/opt/mpich2/ch3_ssm-gnu/man:/usr/share/man:/usr/local/share/ man:/opt/share/man:/opt/pathscale/man:/opt/torque/man MAUI_ROOT=/opt/maui HOSTNAME=abacus.bw01.math.umass.edu NODE_REGEX=n[0-9][0-9][0-9] PVM_RSH=/usr/bin/ssh INTEL_LICENSE_FILE=/opt/intel/licenses HN_IMAGE_NAME=abacus.bw01.math.umass.edu TERM=xterm SHELL=/bin/bash HEAD_NODE_NCPUS=4 HISTSIZE=1000 PBS_ROOT=/opt/torque SSH_CLIENT=::ffff:128.119.47.52 61187 22 TRIPPLITE_PAP_HOME=/opt/poweralert HEAD_NODE2_ALT=master2 SGE_ARCH=lx24-amd64 SGE_CELL=default GOLDEN_CLIENT_FS_ALT=fs01 QTDIR=/usr/lib64/qt-3.3 HN2_IMAGE_NAME=abacus2.bw01.math.umass.edu NODE_IMAGE_PATH=/var/lib/systemimager/images/ nodes.abacus.bw01.math.umass.edu MASTER_SERVICE_LIST_STOP=autofs systemimager MASTER_DNS_DOMAINNAME=bw01.math.umass.edu OLDPWD=/opt PBS_HOME=/var/spool/torque HEAD_NODE_SHORT=abacus IFC_HOME=/opt/intel/fce/9.0 SSH_TTY=/dev/pts/1 NCPUS=4 TORQUE_HOME=/var/spool/torque MASTER_DNS_DOMAINNAME_ALT=bw01.math.umass.edu MPICH2_USES=gnu USER=root LD_LIBRARY_PATH=/opt/pathscale/lib:/opt/lib:/opt/mpich2/ch3_ssm-gnu/ lib::/usr/local/cuda/lib INTEL_HOME=/opt/intel LS_COLORS=no=00:fi=00:di=00;34:ln=00;36:pi=40;33:so=00;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=00;32:*.cmd=00;32:*.exe=00;32:*.com=00;32:*.btm=00;32:*.bat=00;32:*.sh=00;32:*.csh=00;32:*.tar=00;31:*.tgz=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.zip=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.bz=00;31:*.tz=00;31:*.rpm=00;31:*.cpio=00;31:*.jpg=00;35:*.gif=00;35:*.bmp=00;35:*.xbm=00;35:*.xpm=00;35:*.png=00;35:*.tif=00;35: PVM_ROOT=/usr/share/pvm3 NODE_SERVICE_LIST_START=autofs sge pbsmom gmond crond KDEDIR=/usr NODE_IMAGE_NAME=nodes.abacus.bw01.math.umass.edu PVM_ARCH=LINUXX86_64 NODE_NCPUS=4 ENABLE_INTEL_F=no PGI= ENABLE_PATHSCALE=yes MAIL=/var/spool/mail/root PATH=/opt/maui/bin:/opt/maui/sbin:/opt/torque/bin:/opt/torque/sbin:/ opt/bin:/opt/sbin:/opt/mpich2/ch3_ssm-gnu/bin:/opt/mpich2/ch3_ssm-gnu/ sbin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/sbin:/usr/local/ bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/X11R6/bin:/usr/NX/bin:/opt/ pathscale/bin:/root/bin:/usr/local/cuda/bin ENABLE_INTEL_C=no GOLDEN_CLIENT=n001.bw01.math.umass.edu NXDIR=/usr/NX CLUSTER_DNS_DOMAINNAME=bw01.math.umass.edu LD_RUN_PATH=/opt/pathscale/lib:/opt/lib:/opt/mpich2/ch3_ssm-gnu/lib: FS_REGEX=fs[0-9][0-9] F90= INPUTRC=/etc/inputrc PWD=/opt/sage-2.11 SYSIMG_HOME=/var/lib/systemimager FS_IMAGE_PATH=/var/lib/systemimager/images/fs01.bw01.math.umass.edu GOLDEN_CLIENT_FS=fs01.bw01.math.umass.edu PGI_LM_LICENSE_FILE=/opt/pgi/license.dat IDB_HOME=/opt/intel/idbe/9.0 LANG=en_US.UTF-8 TORQUE_ROOT=/opt/torque FS_NAME=fs01.bw01.math.umass.edu ENABLE_MPICH2=yes SGE_ROOT=/opt/sge FS_NAME_SHORT=fs01 PGI_HOME=/opt/pgi PGI_6=/opt/pgi/linux86-64/6.2 ICC_HOME=/opt/intel/cce/9.0 F77= MPICH2_ROOT=/opt/mpich2 MPI_NODES_LIST=/root/pssc/machines.LINUX USE_GSTAT=yes FS_REGEX_SHORT=fs[0-9][0-9][.]bw01.math.umass.edu FS_IMAGE_NAME=fs01.bw01.math.umass.edu GOLDEN_FS=fs01 CXX=g++ SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass CLUSTER_IF=eth0 WK_NCPUS=2 SHLVL=1 HOME=/root COMMD_PORT=16000 NODE_DNS_DOMAINNAME=bw01.math.umass.edu PATHSCALE_LICENSE_FILE=/opt/pathscale/lib/3.0/pscsubscription-5236.xml GOLDEN_CLIENT_ALT=n001 HN2_IMAGE_PATH=/var/lib/systemimager/images/abacus.bw01.math.umass.edu HEAD_NODE_ALT=master FC= FS_NCPUS=2 LOGNAME=root HEAD_NODE2=abacus2.bw01.math.umass.edu PATHSCALE_HOME=/opt/pathscale SSH_CONNECTION=::ffff:128.119.47.52 61187 ::ffff:128.119.47.16 22 HN_IMAGE_PATH=/var/lib/systemimager/images/abacus.bw01.math.umass.edu NODE_SERVICE_LIST_STOP=sge pbsmom gmond crond HEAD_NODE2_SHORT=abacus2 MPI_HOME=/opt/mpich2/ch3_ssm-gnu LESSOPEN=|/usr/bin/lesspipe.sh %s PGI_REL=6.2 FS_NAME_ALT=fs01 INFOPATH=:/opt/share/info CC=gcc RSH_NODES_LIST=/root/pssc/rshnodes ENABLE_PGI=no NODE_REGEX_LONG=n[0-9][0-9][0-9][.]bw01.math.umass.edu HEAD_NODE=abacus.bw01.math.umass.edu PSSC=/root/pssc PATHSCALE_REL=3.0 GOLDEN_NODE=n001 G_BROKEN_FILENAMES=1 _=/bin/env --~--~---------~--~----~------------~-------~--~----~ To post to this group, send email to sage-support@googlegroups.com To unsubscribe from this group, send email to [EMAIL PROTECTED] For more options, visit this group at http://groups.google.com/group/sage-support URLs: http://www.sagemath.org -~----------~----~----~----~------~----~------~--~---
