Hi,
I tried the suggestion to use the command
SAGE64=yes
export SAGE64
that was suggested as response to my last message by David Kirkby.
(My last message was that I could not install sage-4.6.2 to a machine
running Centos 5.5. This is a 64 bit machine with i7 8 core processor.)
However that seems to cause another bug with patch-2.5.9.
I am attaching a screen-shot. Hope someone can suggest a solution.
Roy Joshua
On Wed, Mar 30, 2011 at 2:29 PM, <sage-support+nore...@googlegroups.com>wrote:
> Today's Topic Summary
>
> Group: http://groups.google.com/group/sage-support/topics
>
> - trouble installing sage <#12f0806f0436b28f_group_thread_0> [4
> Updates]
> - sage -upgrade problem... <#12f0806f0436b28f_group_thread_1> [2
> Updates]
> - need eigenvectors of complex matrix to arbitrary
> precision<#12f0806f0436b28f_group_thread_2>[3 Updates]
> - How to run a Magma computation with a
> timeout<#12f0806f0436b28f_group_thread_3>[1 Update]
> - list updating <#12f0806f0436b28f_group_thread_4> [1 Update]
> - sage install on Darwin <#12f0806f0436b28f_group_thread_5> [2 Updates]
>
> Topic: trouble installing
> sage<http://groups.google.com/group/sage-support/t/acb655b4762983e7>
>
> Roy Joshua <rrjos...@gmail.com> Mar 29 09:33PM -0400
> ^<#12f0806f0436b28f_digest_top>
>
> Hi,
>
> I have a Dell 980 optiplex machine with i7 processor (8 core), 16GB
> RAM.
> I tried to install sage on it with OS: Centos 5.5.
>
> I tried both versions sage-4.6.2 and sage-4.5.2 and both crashed.
> more...<http://groups.google.com/group/sage-support/msg/bed4b2d2a740bcef>
>
>
> Roy Joshua <rrjos...@gmail.com> Mar 29 11:27PM -0400
> ^<#12f0806f0436b28f_digest_top>
>
> Hi,
>
> I have a Dell 980 optiplex machine with i7 processor (8 core), 16GB
> RAM.
> I tried to install sage on it with OS: Centos 5.5.
>
> I tried both versions sage-4.6.2 and sage-4.5.2 and both crashed.
> more...<http://groups.google.com/group/sage-support/msg/51b48789d78cde66>
>
>
> achrzesz <achrz...@wp.pl> Mar 29 11:18PM -0700
> ^<#12f0806f0436b28f_digest_top>
>
> In instalatiopn guide you can find:
> SAGE_ATLAS_LIB - if you have an installation of ATLAS on your system
> and you want Sage to use it instead of building and installing its own
> version of ATLAS, set
> more...<http://groups.google.com/group/sage-support/msg/d7e82e72b81bace5>
>
>
> "Dr. David Kirkby" <david.kir...@onetel.net> Mar 30 06:08PM +0100
> ^<#12f0806f0436b28f_digest_top>
>
> On 03/30/11 02:33 AM, Roy Joshua wrote:
> > Hi,
>
> > I have a Dell 980 optiplex machine with i7 processor (8 core), 16GB
> RAM.
> > I tried to install sage on it with OS: Centos 5.5.
>
> more...<http://groups.google.com/group/sage-support/msg/f8471f6ec38d6f80>
>
> Topic: sage -upgrade
> problem...<http://groups.google.com/group/sage-support/t/a85916f850699295>
>
> Thierry Dumont <tdum...@math.univ-lyon1.fr> Mar 30 06:41PM +0200
> ^<#12f0806f0436b28f_digest_top>
>
> It seems that there is a problem with content.wuala.com.
>
> sage -upgrade
> ....
> ....
>
> Automatically selected server content.wuala.com
> more...<http://groups.google.com/group/sage-support/msg/bfa7939be1878195>
>
>
> kcrisman <kcris...@gmail.com> Mar 30 10:05AM -0700
> ^<#12f0806f0436b28f_digest_top>
>
> On Mar 30, 12:41 pm, Thierry Dumont <tdum...@math.univ-lyon1.fr>
> wrote:
>
> > sage -upgrade
> > ....
>
>
> > I am in 4.6.2
>
> Of course, there is nothing to upgrade to at this time, though that
> more...<http://groups.google.com/group/sage-support/msg/a6d142cb7aaec340>
>
> Topic: need eigenvectors of complex matrix to arbitrary
> precision<http://groups.google.com/group/sage-support/t/b532b0e32b0eb927>
>
> Ben123 <ben.is.loca...@gmail.com> Mar 30 08:44AM -0700
> ^<#12f0806f0436b28f_digest_top>
>
> Hello. I've written a sage program which produces a complex matrix. I
> want to find the eigenvalues and associated eigenvectors. I also want
> to use arbitrary precision. I don't care about speed.
> more...<http://groups.google.com/group/sage-support/msg/d669201951f36794>
>
>
> Ben123 <ben.is.loca...@gmail.com> Mar 30 09:08AM -0700
> ^<#12f0806f0436b28f_digest_top>
>
> Update: after reading #10346 on
> http://www.sagemath.org/mirror/src/changelogs/sage-4.6.2.txt
> I upgraded to 4.6.2 and am still having the same problem (no
> eigenvectors specified, even with 500
> more...<http://groups.google.com/group/sage-support/msg/ffdcb2b581556bd>
>
>
> Jason Grout <jason-s...@creativetrax.com> Mar 30 11:20AM -0500
> ^<#12f0806f0436b28f_digest_top>
>
> On 3/30/11 10:44 AM, Ben123 wrote:
> > increased to 500
>
> > How can I find the eigenvectors of a complex Hermitian matrix with
> > arbitrary precision?
>
> One option: you might look at using the alglib
> more...<http://groups.google.com/group/sage-support/msg/f5a7e96987a7eee1>
>
> Topic: How to run a Magma computation with a
> timeout<http://groups.google.com/group/sage-support/t/df8b01f949e396b5>
>
> Tzanko Matev <tsa...@gmail.com> Mar 30 02:15AM -0700
> ^<#12f0806f0436b28f_digest_top>
>
> The alarm() function was exactly what I needed. Thanks! I had tried to
> attach my
> own handler to SIGALRM, but because of, I guess, the way Sage
> handles exceptions it dind't work.
>
> more...<http://groups.google.com/group/sage-support/msg/62b0556eaf35c119>
>
> Topic: list
> updating<http://groups.google.com/group/sage-support/t/4799930844e2cf14>
>
> clodemil <ollie...@scarlet.be> Mar 29 05:59PM -0700
> ^<#12f0806f0436b28f_digest_top>
>
> Jim,
>
> Thank you, that was what I needed: now I can use one single list of 5-
> tuples and update only once!
>
> Claude.
>
>
> more...<http://groups.google.com/group/sage-support/msg/b5ff317ab07ac3a7>
>
> Topic: sage install on
> Darwin<http://groups.google.com/group/sage-support/t/9c06ce3d94d29249>
>
> Niles <nil...@gmail.com> Mar 29 12:17PM -0700
> ^<#12f0806f0436b28f_digest_top>
>
> Hi Jeffrey,
>
> I think you're working too hard to install Sage. For Mac, you just
> need to copy the "sage" folder from the installer disk to your
> "Applications" folder, and then open it and run the
> more...<http://groups.google.com/group/sage-support/msg/14336450c56dfb6a>
>
>
> kcrisman <kcris...@gmail.com> Mar 29 12:35PM -0700
> ^<#12f0806f0436b28f_digest_top>
>
> > Hi.
> > I'm working on a Mac G5 & trying to install Sage. Darwin needs
>
> Great, another PPC Mac user!
>
>
> > So I end up with Sage folders inside of the site-package inside
> > Python, and that
> more...<http://groups.google.com/group/sage-support/msg/1c7a8dbc2ce267c>
>
> --
> To post to this group, send email to sage-support@googlegroups.com
> To unsubscribe from this group, send email to
> sage-support+unsubscr...@googlegroups.com
> For more options, visit this group at
> http://groups.google.com/group/sage-support
> URL: http://www.sagemath.org
>
--
To post to this group, send email to sage-support@googlegroups.com
To unsubscribe from this group, send email to
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For more options, visit this group at
http://groups.google.com/group/sage-support
URL: http://www.sagemath.org
EXAMPLES=examples-4.6.2
ATLAS=atlas-3.8.3.p16
PREREQ=prereq-0.7
DIR=dir-0.1
TACHYON=tachyon-0.98.9.p2
SCIPY_SANDBOX=scipy_sandbox-20071020.p7
MPFI=mpfi-1.3.4-cvs20071125.p8
MERCURIAL=mercurial-1.6.4.p0
CDDLIB=cddlib-094f.p8
ECLIB=eclib-20100711
USER=rjoshua
R=r-2.10.1.p4
SPHINX=sphinx-1.0.4.p6
LS_COLORS=no=00:fi=00:di=00;34:ln=00;36:pi=40;33:so=00;35:bd=40;33;01:cd=40;33;01:or=01;05;37;41:mi=01;05;37;41:ex=00;32:*.cmd=00;32:*.exe=00;32:*.com=00;32:*.btm=00;32:*.bat=00;32:*.sh=00;32:*.csh=00;32:*.tar=00;31:*.tgz=00;31:*.arj=00;31:*.taz=00;31:*.lzh=00;31:*.zip=00;31:*.z=00;31:*.Z=00;31:*.gz=00;31:*.bz2=00;31:*.bz=00;31:*.tz=00;31:*.rpm=00;31:*.cpio=00;31:*.jpg=00;35:*.gif=00;35:*.bmp=00;35:*.xbm=00;35:*.xpm=00;35:*.png=00;35:*.tif=00;35:
LIBGCRYPT=libgcrypt-1.4.4.p3
CVXOPT=cvxopt-1.1.3
BOEHM_GC=boehm_gc-7.1.p6
TERMCAP=termcap-1.3.1.p1
MPIR=mpir-1.2.2.p2
SSH_AUTH_SOCK=/tmp/ssh-qQmUgv4448/agent.4448
GNOME_KEYRING_SOCKET=/tmp/keyring-bUq91U/socket
ZODB=zodb3-3.7.0.p4
GRAPHS=graphs-20070722.p1
ICONV=iconv-1.13.1.p3
KDEDIR=/usr
ECL=ecl-10.4.1
CEPHES=cephes-2.8
SAGE_LOCAL=/home/rjoshua/sg/sage-4.6.2/local
MAKELEVEL=1
SESSION_MANAGER=local/localhost.localdomain:/tmp/.ICE-unix/4448
USERNAME=rjoshua
SAGE_SCRIPTS=sage_scripts-4.6.2
ECM=ecm-6.2.1.p2
TWISTED=twisted-9.0.p2
RUBIKS=rubiks-20070912.p12
FREETYPE=freetype-2.3.5.p3
MFLAGS=
PYGMENTS=pygments-1.3.1.p0
GAP=gap-4.4.12.p4
MAIL=/var/spool/mail/rjoshua
PATH=/home/rjoshua/sg/sage-4.6.2:/home/rjoshua/sg/sage-4.6.2/local/bin:/usr/kerberos/sbin:/usr/kerberos/bin:/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/rjoshua/bin
DESKTOP_SESSION=default
IML=iml-1.0.1.p13
LAPACK=lapack-20071123.p2
EXTCODE=extcode-4.6.2
BLAS=blas-20070724
ZLIB=zlib-1.2.5
SINGULAR=singular-3-1-1-4.p4
GNUTLS=gnutls-2.2.1.p5
POLYBORI=polybori-0.6.4.p6
LIBGPG_ERROR=libgpg_error-1.6.p3
GDM_XSERVER_LOCATION=local
INPUTRC=/etc/inputrc
PWD=/home/rjoshua/sg/sage-4.6.2/spkg
XMODIFIERS=@im=none
LCALC=lcalc-20100428-1.23.p5
SCONS=scons-1.2.0
LINBOX=linbox-1.1.6.p3
OPENCDK=opencdk-0.6.6.p5
LANG=en_US.UTF-8
KDE_IS_PRELINKED=1
FLINTQS=flintqs-20070817.p5
GDMODULE=gdmodule-0.56.p7
SCIPY=scipy-0.8
GFAN=gfan-0.4plus.p1
SAGE_ROOT=/home/rjoshua/sg/sage-4.6.2
SAGE=sage-4.6.2
RATPOINTS=ratpoints-2.1.3.p1
NUMPY=numpy-1.5.0
PARI=pari-2.4.3.alpha.p5
PATCH=patch-2.5.9
GLPK=glpk-4.44
GDMSESSION=default
SSH_ASKPASS=/usr/libexec/openssh/gnome-ssh-askpass
PALP=palp-1.1.p3
SHLVL=6
HOME=/root
PYCRYPTO=pycrypto-2.1.0
GSL=gsl-1.14
PYTHON_GNUTLS=python_gnutls-1.1.4.p7
IPYTHON=ipython-0.9.1.p0
GNOME_DESKTOP_SESSION_ID=Default
FLINT=flint-1.5.0.p5
PYTHONPATH=/home/rjoshua/sg/sage-4.6.2/local
LOGNAME=rjoshua
SQLITE=sqlite-3.6.22
CVS_RSH=ssh
MPMATH=mpmath-0.15
DBUS_SESSION_BUS_ADDRESS=unix:abstract=/tmp/dbus-QYParIXtbm,guid=1ea2b087dc88f1fe9e2181004d93f3dd
NTL=ntl-5.4.2.p12
FORTRAN=fortran-20100629
PIL=pil-1.1.6.p4
LESSOPEN=|/usr/bin/lesspipe.sh %s
SYMPOW=sympow-1.018.1.p8
PYNAC=pynac-0.2.1
MAXIMA=maxima-5.22.1
FPLLL=libfplll-3.0.12.p1
DISPLAY=:0.0
SETUPTOOLS=setuptools-0.6c9.p0
MOIN=moin-1.9.1.p1
ELLIPTIC_CURVES=elliptic_curves-0.1
BOOST_CROPPED=boost-cropped-1.34.1
PYTHON=python-2.6.4.p9
NETWORKX=networkx-1.2.p1
LIBPNG=libpng-1.2.35.p2
sage64=yes
SAGE64=yes
G_BROKEN_FILENAMES=1
COLORTERM=gnome-terminal
XAUTHORITY=/root/.xautheyF9vN
_=/usr/bin/env
***********************************************
make[1]: Entering directory `/home/rjoshua/sg/sage-4.6.2/spkg'
/home/rjoshua/sg/sage-4.6.2/spkg/pipestatus "base/dir-0.1-install 2>&1" "tee -a
/home/rjoshua/sg/sage-4.6.2/spkg/logs/dir-0.1.log"
../data/
../local/
../local/etc
../local/lib
../local/bin
../local/include
../tmp/
/home/rjoshua/sg/sage-4.6.2/spkg/build
installed/
/home/rjoshua/sg/sage-4.6.2/spkg/pipestatus "base/prereq-0.7-install 2>&1" "tee
-a /home/rjoshua/sg/sage-4.6.2/spkg/logs/prereq-0.7.log"
Starting prerequisite check.
Machine: Linux localhost.localdomain 2.6.18-194.el5PAE #1 SMP Fri Apr 2
15:37:44 EDT 2010 i686 i686 i386 GNU/Linux
prereq-0.7/
prereq-0.7/autom4te.cache/
prereq-0.7/autom4te.cache/requests
prereq-0.7/autom4te.cache/output.0
prereq-0.7/autom4te.cache/traces.1
prereq-0.7/autom4te.cache/traces.2
prereq-0.7/autom4te.cache/output.1
prereq-0.7/autom4te.cache/traces.0
prereq-0.7/autom4te.cache/output.2
prereq-0.7/config.h.in
prereq-0.7/configure.ac
prereq-0.7/m4/
prereq-0.7/m4/ax_gcc_option.m4
prereq-0.7/m4/ax_gxx_option.m4
prereq-0.7/m4/ax_c_check_flag.m4
prereq-0.7/m4/ax_gcc_version.m4
prereq-0.7/m4/ax_gxx_version.m4
prereq-0.7/m4/ax_with_perl.4
prereq-0.7/m4/ax_prog_perl_version.m4
prereq-0.7/depcomp
prereq-0.7/missing
prereq-0.7/aclocal.m4
prereq-0.7/install-sh
prereq-0.7/configure
prereq-0.7/Makefile.in
prereq-0.7/config.sub
prereq-0.7/config.guess
prereq-0.7/Makefile.am
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... gawk
checking whether make sets $(MAKE)... yes
checking build system type... i686-pc-linux-gnu
checking host system type... i686-pc-linux-gnu
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for style of include used by make... GNU
checking dependency style of gcc... gcc3
checking for g++... g++
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
checking how to run the C preprocessor... gcc -E
checking for gfortran... gfortran
checking whether we are using the GNU Fortran compiler... yes
checking whether gfortran accepts -g... yes
checking for flex... flex
checking lex output file root... lex.yy
checking lex library... none needed
checking whether yytext is a pointer... no
checking for bison... bison -y
checking for ar... yes
checking for m4... yes
checking for ranlib... yes
checking for ld... yes
checking for strip... yes
checking for bash... yes
checking for latex... yes
checking for perl... /usr/bin/perl
checking for Perl version 5.8.0 or later... yes
checking how to run the C++ preprocessor... g++ -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking complex.h usability... yes
checking complex.h presence... yes
checking for complex.h... yes
checking whether we are using the GNU Fortran compiler... (cached) yes
checking whether gfortran accepts -g... (cached) yes
checking for Fortran flag needed to allow free-form source... -ffree-form
configure: Your Fortran compiler accepts free-format source code
configure: which older F77 compilers do not. This does not 100%
configure: guarantee your compiler is suitable for building SAGE
configure: but it probably is.
checking if gcc accepts -dumpversion option... yes
checking gcc version... 4.1.2
checking if g++ accepts -dumpversion option... yes
checking g++ version... 4.1.2
configure: Excellent, the C, C++ and Fortran compilers are all GCC 4.1.2
configure: Excellent, GCC 4.1.2 is later than the minimum
configure: needed to build Sage, which is GCC version 4.0.1
checking for sqrtl in -lm... yes
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
config.status: executing depfiles commands
/home/rjoshua/sg/sage-4.6.2/spkg/pipestatus "base/bzip2-1.0.5-install 2>&1"
"tee -a /home/rjoshua/sg/sage-4.6.2/spkg/logs/bzip2-1.0.5.log"
Decompressing bzip2
bzip2-1.0.5/blocksort.c
bzip2-1.0.5/huffman.c
bzip2-1.0.5/crctable.c
bzip2-1.0.5/randtable.c
bzip2-1.0.5/compress.c
bzip2-1.0.5/decompress.c
bzip2-1.0.5/bzlib.c
bzip2-1.0.5/bzip2.c
bzip2-1.0.5/bzip2recover.c
bzip2-1.0.5/bzlib.h
bzip2-1.0.5/bzlib_private.h
bzip2-1.0.5/Makefile
bzip2-1.0.5/LICENSE
bzip2-1.0.5/bzip2.1
bzip2-1.0.5/bzip2.1.preformatted
bzip2-1.0.5/bzip2.txt
bzip2-1.0.5/words0
bzip2-1.0.5/words1
bzip2-1.0.5/words2
bzip2-1.0.5/words3
bzip2-1.0.5/sample1.ref
bzip2-1.0.5/sample2.ref
bzip2-1.0.5/sample3.ref
bzip2-1.0.5/sample1.bz2
bzip2-1.0.5/sample2.bz2
bzip2-1.0.5/sample3.bz2
bzip2-1.0.5/dlltest.c
bzip2-1.0.5/manual.html
bzip2-1.0.5/manual.pdf
bzip2-1.0.5/manual.ps
bzip2-1.0.5/README
bzip2-1.0.5/README.COMPILATION.PROBLEMS
bzip2-1.0.5/README.XML.STUFF
bzip2-1.0.5/CHANGES
bzip2-1.0.5/libbz2.def
bzip2-1.0.5/libbz2.dsp
bzip2-1.0.5/dlltest.dsp
bzip2-1.0.5/makefile.msc
bzip2-1.0.5/unzcrash.c
bzip2-1.0.5/spewG.c
bzip2-1.0.5/mk251.c
bzip2-1.0.5/bzdiff
bzip2-1.0.5/bzdiff.1
bzip2-1.0.5/bzmore
bzip2-1.0.5/bzmore.1
bzip2-1.0.5/bzgrep
bzip2-1.0.5/bzgrep.1
bzip2-1.0.5/Makefile-libbz2_so
bzip2-1.0.5/bz-common.xsl
bzip2-1.0.5/bz-fo.xsl
bzip2-1.0.5/bz-html.xsl
bzip2-1.0.5/bzip.css
bzip2-1.0.5/entities.xml
bzip2-1.0.5/manual.xml
bzip2-1.0.5/format.pl
bzip2-1.0.5/xmlproc.sh
make[2]: Entering directory `/home/rjoshua/sg/sage-4.6.2/spkg/build/bzip2-1.0.5'
If compilation produces errors, or a large number of warnings,
please read README.COMPILATION.PROBLEMS -- you might be able to
adjust the flags in this Makefile to improve matters.
Also in README.COMPILATION.PROBLEMS are some hints that may help
if your build produces an executable which is unable to correctly
handle so-called 'large files' -- files of size 2GB or more.
gcc -fPIC -c blocksort.c
gcc -fPIC -c huffman.c
gcc -fPIC -c crctable.c
gcc -fPIC -c randtable.c
gcc -fPIC -c compress.c
gcc -fPIC -c decompress.c
gcc -fPIC -c bzlib.c
rm -f libbz2.a
ar cq libbz2.a blocksort.o huffman.o crctable.o randtable.o compress.o
decompress.o bzlib.o
ranlib libbz2.a
gcc -fPIC -c bzip2.c
gcc -fPIC -o bzip2 bzip2.o -L. -lbz2
gcc -fPIC -c bzip2recover.c
gcc -fPIC -o bzip2recover bzip2recover.o
Doing 6 tests (3 compress, 3 uncompress) ...
If there's a problem, things might stop at this point.
./bzip2 -1 < sample1.ref > sample1.rb2
./bzip2 -2 < sample2.ref > sample2.rb2
./bzip2 -3 < sample3.ref > sample3.rb2
./bzip2 -d < sample1.bz2 > sample1.tst
./bzip2 -d < sample2.bz2 > sample2.tst
./bzip2 -ds < sample3.bz2 > sample3.tst
cmp sample1.bz2 sample1.rb2
cmp sample2.bz2 sample2.rb2
cmp sample3.bz2 sample3.rb2
cmp sample1.tst sample1.ref
cmp sample2.tst sample2.ref
cmp sample3.tst sample3.ref
If you got this far and the 'cmp's didn't complain, it looks
like you're in business.
To install in /usr/local/bin, /usr/local/lib, /usr/local/man and
/usr/local/include, type
make install
To install somewhere else, eg, /xxx/yyy/{bin,lib,man,include}, type
make install PREFIX=/xxx/yyy
If you are (justifiably) paranoid and want to see what 'make install'
is going to do, you can first do
make -n install or
make -n install PREFIX=/xxx/yyy respectively.
The -n instructs make to show the commands it would execute, but
not actually execute them.
Instructions for use are in the preformatted manual page, in the file
bzip2.txt. For more detailed documentation, read the full manual.
It is available in Postscript form (manual.ps), PDF form (manual.pdf),
and HTML form (manual.html).
You can also do "bzip2 --help" to see some helpful information.
"bzip2 -L" displays the software license.
make[2]: Leaving directory `/home/rjoshua/sg/sage-4.6.2/spkg/build/bzip2-1.0.5'
make[2]: Entering directory `/home/rjoshua/sg/sage-4.6.2/spkg/build/bzip2-1.0.5'
if ( test ! -d /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin ) ; then mkdir -p
/home/rjoshua/sg/sage-4.6.2/spkg/../local/bin ; fi
if ( test ! -d /home/rjoshua/sg/sage-4.6.2/spkg/../local/lib ) ; then mkdir -p
/home/rjoshua/sg/sage-4.6.2/spkg/../local/lib ; fi
if ( test ! -d /home/rjoshua/sg/sage-4.6.2/spkg/../local/man ) ; then mkdir -p
/home/rjoshua/sg/sage-4.6.2/spkg/../local/man ; fi
if ( test ! -d /home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1 ) ; then
mkdir -p /home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1 ; fi
if ( test ! -d /home/rjoshua/sg/sage-4.6.2/spkg/../local/include ) ; then mkdir
-p /home/rjoshua/sg/sage-4.6.2/spkg/../local/include ; fi
cp -f bzip2 /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzip2
cp -f bzip2 /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bunzip2
cp -f bzip2 /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzcat
cp -f bzip2recover /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzip2recover
chmod a+x /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzip2
chmod a+x /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bunzip2
chmod a+x /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzcat
chmod a+x /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzip2recover
cp -f bzip2.1 /home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1
chmod a+r /home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1/bzip2.1
cp -f bzlib.h /home/rjoshua/sg/sage-4.6.2/spkg/../local/include
chmod a+r /home/rjoshua/sg/sage-4.6.2/spkg/../local/include/bzlib.h
cp -f libbz2.a /home/rjoshua/sg/sage-4.6.2/spkg/../local/lib
chmod a+r /home/rjoshua/sg/sage-4.6.2/spkg/../local/lib/libbz2.a
cp -f bzgrep /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzgrep
ln -s -f /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzgrep
/home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzegrep
ln -s -f /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzgrep
/home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzfgrep
chmod a+x /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzgrep
cp -f bzmore /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzmore
ln -s -f /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzmore
/home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzless
chmod a+x /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzmore
cp -f bzdiff /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzdiff
ln -s -f /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzdiff
/home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzcmp
chmod a+x /home/rjoshua/sg/sage-4.6.2/spkg/../local/bin/bzdiff
cp -f bzgrep.1 bzmore.1 bzdiff.1
/home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1
chmod a+r /home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1/bzgrep.1
chmod a+r /home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1/bzmore.1
chmod a+r /home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1/bzdiff.1
echo ".so man1/bzgrep.1" >
/home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1/bzegrep.1
echo ".so man1/bzgrep.1" >
/home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1/bzfgrep.1
echo ".so man1/bzmore.1" >
/home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1/bzless.1
echo ".so man1/bzdiff.1" >
/home/rjoshua/sg/sage-4.6.2/spkg/../local/man/man1/bzcmp.1
make[2]: Leaving directory `/home/rjoshua/sg/sage-4.6.2/spkg/build/bzip2-1.0.5'
/home/rjoshua/sg/sage-4.6.2/spkg/pipestatus "sage-spkg ${SAGE_SPKG_OPTS}
patch-2.5.9 2>&1" "tee -a /home/rjoshua/sg/sage-4.6.2/spkg/logs/patch-2.5.9.log"
Warning: Attempted to overwrite SAGE_ROOT environment variable
patch-2.5.9
Machine:
Linux localhost.localdomain 2.6.18-194.el5PAE #1 SMP Fri Apr 2 15:37:44 EDT
2010 i686 i686 i386 GNU/Linux
Deleting directories from past builds of previous/current versions of
patch-2.5.9
Extracting package /home/rjoshua/sg/sage-4.6.2/spkg/standard/patch-2.5.9.spkg
...
-rw-r--r-- 1 1237 1237 167855 Nov 18 04:33
/home/rjoshua/sg/sage-4.6.2/spkg/standard/patch-2.5.9.spkg
Finished extraction
****************************************************
Host system
uname -a:
Linux localhost.localdomain 2.6.18-194.el5PAE #1 SMP Fri Apr 2 15:37:44 EDT
2010 i686 i686 i386 GNU/Linux
****************************************************
****************************************************
CC Version
gcc -v
Using built-in specs.
Target: i386-redhat-linux
Configured with: ../configure --prefix=/usr --mandir=/usr/share/man
--infodir=/usr/share/info --enable-shared --enable-threads=posix
--enable-checking=release --with-system-zlib --enable-__cxa_atexit
--disable-libunwind-exceptions --enable-libgcj-multifile
--enable-languages=c,c++,objc,obj-c++,java,fortran,ada --enable-java-awt=gtk
--disable-dssi --enable-plugin
--with-java-home=/usr/lib/jvm/java-1.4.2-gcj-1.4.2.0/jre --with-cpu=generic
--host=i386-redhat-linux
Thread model: posix
gcc version 4.1.2 20080704 (Red Hat 4.1.2-48)
****************************************************
Creating a 64-bit version of GNU patch
checking for gcc... gcc
checking for C compiler default output... configure: error: C compiler cannot
create executables
See `config.log' for more details.
Error configuring GNU patch
real 0m0.129s
user 0m0.043s
sys 0m0.095s
sage: An error occurred while installing patch-2.5.9
Please email sage-devel http://groups.google.com/group/sage-devel
explaining the problem and send the relevant part of
of /home/rjoshua/sg/sage-4.6.2/install.log. Describe your computer, operating
system, etc.
If you want to try to fix the problem yourself, *don't* just cd to
/home/rjoshua/sg/sage-4.6.2/spkg/build/patch-2.5.9 and type 'make check' or
whatever is appropriate.
Instead, the following commands setup all environment variables
correctly and load a subshell for you to debug the error:
(cd '/home/rjoshua/sg/sage-4.6.2/spkg/build/patch-2.5.9' &&
'/home/rjoshua/sg/sage-4.6.2/sage' -sh)
When you are done debugging, you can type "exit" to leave the
subshell.
make[1]: *** [installed/patch-2.5.9] Error 1
