tried upgrading sage with sage --upgrade. build failed on cython log file attached Any help gratefully received. thanks in advance
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Found local metadata for cython-0.24.1.p2 Attempting to download package Cython-0.24.1.tar.gz from mirrors http://mirrors-usa.go-parts.com/sage/sagemath/spkg/upstream/cython/Cython-0.24.1.tar.gz [......................................................................] cython-0.24.1.p2 ==================================================== Setting up build directory for cython-0.24.1.p2 Finished extraction **************************************************** Host system: Linux linux.site 3.16.7-45-desktop #1 SMP PREEMPT Fri Oct 21 12:20:02 UTC 2016 (f3e3fc4) x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper Target: x86_64-suse-linux Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --enable-linux-futex --program-suffix=-4.8 --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux --host=x86_64-suse-linux Thread model: posix gcc version 4.8.3 20140627 [gcc-4_8-branch revision 212064] (SUSE Linux) **************************************************** patching file Cython/Debugger/libpython.py patching file Cython/Compiler/Symtab.py Hunk #1 succeeded at 2051 (offset -4 lines). patching file tests/run/cdef_cpdef_GH543.srctree patching file Cython/Compiler/Main.py Warning: This package has a badly-behaved setup.py which outputs more than the package name for 'setup.py --name'; using the last line as the package name: Cython Usage: pip uninstall [options] <package> ... pip uninstall [options] -r <requirements file> ... no such option: --disable-pip-version-check Error installing Cython real 0m1.874s user 0m1.517s sys 0m0.295s ************************************************************************ Error installing package cython-0.24.1.p2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/zak/sage-6.5/logs/pkgs/cython-0.24.1.p2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2' && '/home/zak/sage-6.5/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for cython-0.24.1.p2 Using cached file /home/zak/sage-6.5/upstream/Cython-0.24.1.tar.gz cython-0.24.1.p2 ==================================================== Setting up build directory for cython-0.24.1.p2 Finished extraction **************************************************** Host system: Linux linux.site 3.16.7-45-desktop #1 SMP PREEMPT Fri Oct 21 12:20:02 UTC 2016 (f3e3fc4) x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper Target: x86_64-suse-linux Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --enable-linux-futex --program-suffix=-4.8 --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux --host=x86_64-suse-linux Thread model: posix gcc version 4.8.3 20140627 [gcc-4_8-branch revision 212064] (SUSE Linux) **************************************************** patching file Cython/Debugger/libpython.py patching file Cython/Compiler/Symtab.py Hunk #1 succeeded at 2051 (offset -4 lines). patching file tests/run/cdef_cpdef_GH543.srctree patching file Cython/Compiler/Main.py Warning: This package has a badly-behaved setup.py which outputs more than the package name for 'setup.py --name'; using the last line as the package name: Cython Usage: pip uninstall [options] <package> ... pip uninstall [options] -r <requirements file> ... no such option: --disable-pip-version-check Error installing Cython real 0m2.895s user 0m2.502s sys 0m0.344s ************************************************************************ Error installing package cython-0.24.1.p2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/zak/sage-6.5/logs/pkgs/cython-0.24.1.p2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2' && '/home/zak/sage-6.5/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for cython-0.24.1.p2 Using cached file /home/zak/sage-6.5/upstream/Cython-0.24.1.tar.gz cython-0.24.1.p2 ==================================================== Setting up build directory for cython-0.24.1.p2 Finished extraction **************************************************** Host system: Linux linux.site 3.16.7-45-desktop #1 SMP PREEMPT Fri Oct 21 12:20:02 UTC 2016 (f3e3fc4) x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper Target: x86_64-suse-linux Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --enable-linux-futex --program-suffix=-4.8 --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux --host=x86_64-suse-linux Thread model: posix gcc version 4.8.3 20140627 [gcc-4_8-branch revision 212064] (SUSE Linux) **************************************************** patching file Cython/Debugger/libpython.py patching file Cython/Compiler/Symtab.py Hunk #1 succeeded at 2051 (offset -4 lines). patching file tests/run/cdef_cpdef_GH543.srctree patching file Cython/Compiler/Main.py Warning: This package has a badly-behaved setup.py which outputs more than the package name for 'setup.py --name'; using the last line as the package name: Cython Usage: pip uninstall [options] <package> ... pip uninstall [options] -r <requirements file> ... no such option: --disable-pip-version-check Error installing Cython real 0m1.689s user 0m1.386s sys 0m0.271s ************************************************************************ Error installing package cython-0.24.1.p2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/zak/sage-6.5/logs/pkgs/cython-0.24.1.p2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2' && '/home/zak/sage-6.5/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for cython-0.24.1.p2 Using cached file /home/zak/sage-6.5/upstream/Cython-0.24.1.tar.gz cython-0.24.1.p2 ==================================================== Setting up build directory for cython-0.24.1.p2 Finished extraction **************************************************** Host system: Linux linux.site 3.16.7-45-desktop #1 SMP PREEMPT Fri Oct 21 12:20:02 UTC 2016 (f3e3fc4) x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper Target: x86_64-suse-linux Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --enable-linux-futex --program-suffix=-4.8 --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux --host=x86_64-suse-linux Thread model: posix gcc version 4.8.3 20140627 [gcc-4_8-branch revision 212064] (SUSE Linux) **************************************************** patching file Cython/Debugger/libpython.py patching file Cython/Compiler/Symtab.py Hunk #1 succeeded at 2051 (offset -4 lines). patching file tests/run/cdef_cpdef_GH543.srctree patching file Cython/Compiler/Main.py Warning: This package has a badly-behaved setup.py which outputs more than the package name for 'setup.py --name'; using the last line as the package name: Cython Usage: pip uninstall [options] <package> ... pip uninstall [options] -r <requirements file> ... no such option: --disable-pip-version-check Error installing Cython real 0m1.700s user 0m1.403s sys 0m0.251s ************************************************************************ Error installing package cython-0.24.1.p2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/zak/sage-6.5/logs/pkgs/cython-0.24.1.p2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2' && '/home/zak/sage-6.5/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for cython-0.24.1.p2 Using cached file /home/zak/sage-6.5/upstream/Cython-0.24.1.tar.gz cython-0.24.1.p2 ==================================================== Setting up build directory for cython-0.24.1.p2 Finished extraction **************************************************** Host system: Linux linux.site 3.16.7-45-desktop #1 SMP PREEMPT Fri Oct 21 12:20:02 UTC 2016 (f3e3fc4) x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper Target: x86_64-suse-linux Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --enable-linux-futex --program-suffix=-4.8 --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux --host=x86_64-suse-linux Thread model: posix gcc version 4.8.3 20140627 [gcc-4_8-branch revision 212064] (SUSE Linux) **************************************************** patching file Cython/Debugger/libpython.py patching file Cython/Compiler/Symtab.py Hunk #1 succeeded at 2051 (offset -4 lines). patching file tests/run/cdef_cpdef_GH543.srctree patching file Cython/Compiler/Main.py Warning: This package has a badly-behaved setup.py which outputs more than the package name for 'setup.py --name'; using the last line as the package name: Cython Usage: pip uninstall [options] <package> ... pip uninstall [options] -r <requirements file> ... no such option: --disable-pip-version-check Error installing Cython real 0m1.700s user 0m1.426s sys 0m0.235s ************************************************************************ Error installing package cython-0.24.1.p2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/zak/sage-6.5/logs/pkgs/cython-0.24.1.p2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2' && '/home/zak/sage-6.5/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for cython-0.24.1.p2 Using cached file /home/zak/sage-6.5/upstream/Cython-0.24.1.tar.gz cython-0.24.1.p2 ==================================================== Setting up build directory for cython-0.24.1.p2 Finished extraction **************************************************** Host system: Linux linux.site 3.16.7-45-desktop #1 SMP PREEMPT Fri Oct 21 12:20:02 UTC 2016 (f3e3fc4) x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper Target: x86_64-suse-linux Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --enable-linux-futex --program-suffix=-4.8 --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux --host=x86_64-suse-linux Thread model: posix gcc version 4.8.3 20140627 [gcc-4_8-branch revision 212064] (SUSE Linux) **************************************************** patching file Cython/Debugger/libpython.py patching file Cython/Compiler/Symtab.py Hunk #1 succeeded at 2051 (offset -4 lines). patching file tests/run/cdef_cpdef_GH543.srctree patching file Cython/Compiler/Main.py Warning: This package has a badly-behaved setup.py which outputs more than the package name for 'setup.py --name'; using the last line as the package name: Cython Usage: pip uninstall [options] <package> ... pip uninstall [options] -r <requirements file> ... no such option: --disable-pip-version-check Error installing Cython real 0m1.680s user 0m1.363s sys 0m0.290s ************************************************************************ Error installing package cython-0.24.1.p2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/zak/sage-6.5/logs/pkgs/cython-0.24.1.p2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2' && '/home/zak/sage-6.5/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for cython-0.24.1.p2 Using cached file /home/zak/sage-6.5/upstream/Cython-0.24.1.tar.gz cython-0.24.1.p2 ==================================================== Setting up build directory for cython-0.24.1.p2 Finished extraction **************************************************** Host system: Linux linux.site 3.16.7-45-desktop #1 SMP PREEMPT Fri Oct 21 12:20:02 UTC 2016 (f3e3fc4) x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper Target: x86_64-suse-linux Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --enable-linux-futex --program-suffix=-4.8 --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux --host=x86_64-suse-linux Thread model: posix gcc version 4.8.3 20140627 [gcc-4_8-branch revision 212064] (SUSE Linux) **************************************************** patching file Cython/Debugger/libpython.py patching file Cython/Compiler/Symtab.py Hunk #1 succeeded at 2051 (offset -4 lines). patching file tests/run/cdef_cpdef_GH543.srctree patching file Cython/Compiler/Main.py Warning: This package has a badly-behaved setup.py which outputs more than the package name for 'setup.py --name'; using the last line as the package name: Cython Usage: pip uninstall [options] <package> ... pip uninstall [options] -r <requirements file> ... no such option: --disable-pip-version-check Error installing Cython real 0m1.685s user 0m1.368s sys 0m0.267s ************************************************************************ Error installing package cython-0.24.1.p2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/zak/sage-6.5/logs/pkgs/cython-0.24.1.p2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2' && '/home/zak/sage-6.5/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for cython-0.24.1.p2 Using cached file /home/zak/sage-6.5/upstream/Cython-0.24.1.tar.gz cython-0.24.1.p2 ==================================================== Setting up build directory for cython-0.24.1.p2 Finished extraction **************************************************** Host system: Linux linux.site 3.16.7-45-desktop #1 SMP PREEMPT Fri Oct 21 12:20:02 UTC 2016 (f3e3fc4) x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper Target: x86_64-suse-linux Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --enable-linux-futex --program-suffix=-4.8 --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux --host=x86_64-suse-linux Thread model: posix gcc version 4.8.3 20140627 [gcc-4_8-branch revision 212064] (SUSE Linux) **************************************************** patching file Cython/Debugger/libpython.py patching file Cython/Compiler/Symtab.py Hunk #1 succeeded at 2051 (offset -4 lines). patching file tests/run/cdef_cpdef_GH543.srctree patching file Cython/Compiler/Main.py Warning: This package has a badly-behaved setup.py which outputs more than the package name for 'setup.py --name'; using the last line as the package name: Cython Usage: pip uninstall [options] <package> ... pip uninstall [options] -r <requirements file> ... no such option: --disable-pip-version-check Error installing Cython real 0m1.699s user 0m1.395s sys 0m0.262s ************************************************************************ Error installing package cython-0.24.1.p2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/zak/sage-6.5/logs/pkgs/cython-0.24.1.p2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2' && '/home/zak/sage-6.5/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************ Found local metadata for cython-0.24.1.p2 Using cached file /home/zak/sage-6.5/upstream/Cython-0.24.1.tar.gz cython-0.24.1.p2 ==================================================== Setting up build directory for cython-0.24.1.p2 Finished extraction **************************************************** Host system: Linux linux.site 3.16.7-45-desktop #1 SMP PREEMPT Fri Oct 21 12:20:02 UTC 2016 (f3e3fc4) x86_64 x86_64 x86_64 GNU/Linux **************************************************** C compiler: gcc C compiler version: Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib64/gcc/x86_64-suse-linux/4.8/lto-wrapper Target: x86_64-suse-linux Configured with: ../configure --prefix=/usr --infodir=/usr/share/info --mandir=/usr/share/man --libdir=/usr/lib64 --libexecdir=/usr/lib64 --enable-languages=c,c++,objc,fortran,obj-c++,java,ada --enable-checking=release --with-gxx-include-dir=/usr/include/c++/4.8 --enable-ssp --disable-libssp --disable-plugin --with-bugurl=http://bugs.opensuse.org/ --with-pkgversion='SUSE Linux' --disable-libgcj --disable-libmudflap --with-slibdir=/lib64 --with-system-zlib --enable-__cxa_atexit --enable-libstdcxx-allocator=new --disable-libstdcxx-pch --enable-version-specific-runtime-libs --enable-linker-build-id --enable-linux-futex --program-suffix=-4.8 --without-system-libunwind --with-arch-32=i586 --with-tune=generic --build=x86_64-suse-linux --host=x86_64-suse-linux Thread model: posix gcc version 4.8.3 20140627 [gcc-4_8-branch revision 212064] (SUSE Linux) **************************************************** patching file Cython/Debugger/libpython.py patching file Cython/Compiler/Symtab.py Hunk #1 succeeded at 2051 (offset -4 lines). patching file tests/run/cdef_cpdef_GH543.srctree patching file Cython/Compiler/Main.py Warning: This package has a badly-behaved setup.py which outputs more than the package name for 'setup.py --name'; using the last line as the package name: Cython Usage: pip uninstall [options] <package> ... pip uninstall [options] -r <requirements file> ... no such option: --disable-pip-version-check Error installing Cython real 0m1.718s user 0m1.393s sys 0m0.276s ************************************************************************ Error installing package cython-0.24.1.p2 ************************************************************************ Please email sage-devel (http://groups.google.com/group/sage-devel) explaining the problem and including the relevant part of the log file /home/zak/sage-6.5/logs/pkgs/cython-0.24.1.p2.log Describe your computer, operating system, etc. If you want to try to fix the problem yourself, *don't* just cd to /home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2 and type 'make' or whatever is appropriate. Instead, the following commands setup all environment variables correctly and load a subshell for you to debug the error: (cd '/home/zak/sage-6.5/local/var/tmp/sage/build/cython-0.24.1.p2' && '/home/zak/sage-6.5/sage' --sh) When you are done debugging, you can type "exit" to leave the subshell. ************************************************************************
