On Tuesday, February 20, 2018 at 7:26:25 PM UTC, Dillon Ethier wrote: > > Alright, I unset LD_LIBRARY_PATH and changed PATH to > /usr/sbin:/usr/bin:/sbin:/bin:/ then rebuilt it, and it worked. I reran the > tests and only one doctest failed. To check, I rebooted and tried again, > causing a crash. But LD_LIBRARY_PATH and PATH had reinitialized to their > previous values. >
it is because they are set in a (hidden) config file, such as ~/.bashrc or ~/.bash_profile (which in turn might source more config data from /etc/bash/bashrc (it differs from one Linux distro to another how these files are exactly named) No need to reboot after changing these, loggin out/logging in again should be more than enough (often merely sourcing the updates suffice) > I unset LD_LIBRARY_PATH and now it works, so the problem must be with that > variable specifically. Thank you so much for your patience and help! > > On Tuesday, February 20, 2018 at 11:14:50 AM UTC-5, Dima Pasechnik wrote: >> >> I bet you have stuff in /usr/local/lib (to which your LD_LIBRARY_PATH is >> pointing to) that is problematic. >> Unset it and try again. >> >> Also, I'd remove /usr/local/* things from the PATH >> >> On Tuesday, February 20, 2018 at 4:11:16 PM UTC, Dillon Ethier wrote: >>> >>> I uninstalled Anaconda completely and I can't find any relevent vars >>> sticking around but the problem persists. >>> This is the output of 'env': >>> >>> CLUTTER_IM_MODULE=xim >>> LC_ALL=en_US.UTF-8 >>> LD_LIBRARY_PATH=.:/usr/local/lib >>> >>> LS_COLORS=rs=0:di=01;34:ln=01;36:mh=00:pi=40;33:so=01;35:do=01;35:bd=40;33;01:cd=40;33;01:or=40;31;01:mi=00:su=37;41:sg=30;43:ca=30;41:tw=30;42:ow=34;42:st=37;44:ex=01;32:*.tar=01;31:*.tgz=01;31:*.arc=01;31:*.arj=01;31:*.taz=01;31:*.lha=01;31:*.lz4=01;31:*.lzh=01;31:*.lzma=01;31:*.tlz=01;31:*.txz=01;31:*.tzo=01;31:*.t7z=01;31:*.zip=01;31:*.z=01;31:*.Z=01;31:*.dz=01;31:*.gz=01;31:*.lrz=01;31:*.lz=01;31:*.lzo=01;31:*.xz=01;31:*.zst=01;31:*.tzst=01;31:*.bz2=01;31:*.bz=01;31:*.tbz=01;31:*.tbz2=01;31:*.tz=01;31:*.deb=01;31:*.rpm=01;31:*.jar=01;31:*.war=01;31:*.ear=01;31:*.sar=01;31:*.rar=01;31:*.alz=01;31:*.ace=01;31:*.zoo=01;31:*.cpio=01;31:*.7z=01;31:*.rz=01;31:*.cab=01;31:*.jpg=01;35:*.jpeg=01;35:*.mjpg=01;35:*.mjpeg=01;35:*.gif=01;35:*.bmp=01;35:*.pbm=01;35:*.pgm=01;35:*.ppm=01;35:*.tga=01;35:*.xbm=01;35:*.xpm=01;35:*.tif=01;35:*.tiff=01;35:*.png=01;35:*.svg=01;35:*.svgz=01;35:*.mng=01;35:*.pcx=01;35:*.mov=01;35:*.mpg=01;35:*.mpeg=01;35:*.m2v=01;35:*.mkv=01;35:*.webm=01;35:*.ogm=01;35:*.mp4=01;35:*.m4v=01;35:*.mp4v=01;35:*.vob=01;35:*.qt=01;35:*.nuv=01;35:*.wmv=01;35:*.asf=01;35:*.rm=01;35:*.rmvb=01;35:*.flc=01;35:*.avi=01;35:*.fli=01;35:*.flv=01;35:*.gl=01;35:*.dl=01;35:*.xcf=01;35:*.xwd=01;35:*.yuv=01;35:*.cgm=01;35:*.emf=01;35:*.ogv=01;35:*.ogx=01;35:*.aac=00;36:*.au=00;36:*.flac=00;36:*.m4a=00;36:*.mid=00;36:*.midi=00;36:*.mka=00;36:*.mp3=00;36:*.mpc=00;36:*.ogg=00;36:*.ra=00;36:*.wav=00;36:*.oga=00;36:*.opus=00;36:*.spx=00;36:*.xspf=00;36: >>> LESSCLOSE=/usr/bin/lesspipe %s %s >>> TERMINATOR_UUID=urn:uuid:6eb55745-6a99-427c-875e-7a590077cafb >>> XDG_MENU_PREFIX=gnome- >>> LANG=en_US.UTF-8 >>> DISPLAY=:0 >>> GNOME_SHELL_SESSION_MODE=ubuntu >>> COLORTERM=truecolor >>> ZEITGEIST_DATA_PATH=/home/dillon/.local/share/zeitgeist >>> USERNAME=dillon >>> XDG_VTNR=2 >>> GIO_LAUNCHED_DESKTOP_FILE_PID=32694 >>> SSH_AUTH_SOCK=/run/user/1000/keyring/ssh >>> XDG_SESSION_ID=9 >>> USER=dillon >>> DESKTOP_SESSION=ubuntu >>> QT4_IM_MODULE=xim >>> TEXTDOMAINDIR=/usr/share/locale/ >>> WAYLAND_DISPLAY=wayland-0 >>> PWD=/home/dillon >>> HOME=/home/dillon >>> JOURNAL_STREAM=9:391383 >>> TEXTDOMAIN=im-config >>> XDG_SESSION_TYPE=wayland >>> >>> XDG_DATA_DIRS=/usr/share/ubuntu:/home/dillon/.local/share/flatpak/exports/share/:/var/lib/flatpak/exports/share/:/usr/local/share/:/usr/share/:/var/lib/snapd/desktop >>> TERMINATOR_DBUS_NAME=net.tenshu.Terminator20x20309d54defed5d4 >>> XDG_SESSION_DESKTOP=ubuntu >>> GJS_DEBUG_OUTPUT=stderr >>> TERMINATOR_DBUS_PATH=/net/tenshu/Terminator2 >>> TERM=xterm-256color >>> SHELL=/bin/bash >>> VTE_VERSION=4804 >>> QT_IM_MODULE=ibus >>> XMODIFIERS=@im=ibus >>> IM_CONFIG_PHASE=2 >>> XDG_CURRENT_DESKTOP=ubuntu:GNOME >>> >>> GIO_LAUNCHED_DESKTOP_FILE=/home/dillon/.local/share/applications/x-terminal-emulator.desktop >>> XDG_SEAT=seat0 >>> SHLVL=3 >>> LANGUAGE=en_US.UTF-8 >>> GDMSESSION=ubuntu >>> GNOME_DESKTOP_SESSION_ID=this-is-deprecated >>> LOGNAME=dillon >>> DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/1000/bus >>> XDG_RUNTIME_DIR=/run/user/1000 >>> XDG_CONFIG_DIRS=/etc/xdg/xdg-ubuntu:/etc/xdg/xdg-ubuntu:/etc/xdg >>> >>> PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/usr/local/games:/snap/bin >>> GJS_DEBUG_TOPICS=JS ERROR;JS LOG >>> >>> SESSION_MANAGER=local/lappy:@/tmp/.ICE-unix/31985,unix/lappy:/tmp/.ICE-unix/31985 >>> LESSOPEN=| /usr/bin/lesspipe %s >>> GTK_IM_MODULE=ibus >>> _=/usr/bin/env >>> OLDPWD=/home/dillon/.cache >>> >>> I'm considering reinstalling the OS in order to get this to work again. >>> >>> >>> On Tuesday, February 20, 2018 at 3:11:23 AM UTC-5, Dima Pasechnik wrote: >>>> >>>> most probably you have a conflict with Anaconda installation. Unset all >>>> the relevant to Anaconda env. vars before rebuilding Sage. >>> >>> -- You received this message because you are subscribed to the Google Groups "sage-support" group. To unsubscribe from this group and stop receiving emails from it, send an email to sage-support+unsubscr...@googlegroups.com. To post to this group, send email to sage-support@googlegroups.com. Visit this group at https://groups.google.com/group/sage-support. For more options, visit https://groups.google.com/d/optout.
