Everything that depends on updated Debian libs has to be rebuilt - looks like
make giac-clean is needed too, for sure. On Fri, Dec 10, 2021 at 10:36 AM Emmanuel Charpentier <emanuel.charpent...@gmail.com> wrote: > > > > Le vendredi 10 décembre 2021 à 01:04:33 UTC+1, Matthias Koeppe a écrit : >> >> "make sagelib-clean" will fix this > > > Nope. `make sagelib-clean` succeeds, but the following `make` fails at > documentation ; attempting `make doc-clean && make also fails, *with the very > same error*... : > > ``` > [sagemath_doc_html-none] cd /usr/local/sage-9 && ./sage --docbuild > --no-pdf-links reference/libs inventory --no-prune-empty-dirs > [sagemath_doc_html-none] Warning: Could not import sage.libs.giac > libgsl.so.25: cannot open shared object file: No such file or directory > [sagemath_doc_html-none] > /usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/__init__.py:1066: > DeprecationWarning: the module sage.libs.ratpoints is deprecated; use > pari.ellratpoints or pari.hyperellratpoints instead > [sagemath_doc_html-none] See http://trac.sagemath.org/24531 for details. > [sagemath_doc_html-none] __import__(module_name) > [sagemath_doc_html-none] [libs ] building [inventory]: targets for 39 > source files that are out of date > [sagemath_doc_html-none] [libs ] updating environment: [new config] 39 > added, 0 changed, 0 removed > [sagemath_doc_html-none] [libs ] WARNING: autodoc: failed to import > module 'giac' from module 'sage.libs'; the following exception was raised: > [sagemath_doc_html-none] [libs ] libgsl.so.25: cannot open shared object > file: No such file or directory > [sagemath_doc_html-none] [libs ] The inventory files are in > local/share/doc/sage/inventory/en/reference/libs. > [sagemath_doc_html-none] Error building the documentation. > [sagemath_doc_html-none] Traceback (most recent call last): > [sagemath_doc_html-none] File "/usr/lib/python3.9/runpy.py", line 197, in > _run_module_as_main > [sagemath_doc_html-none] return _run_code(code, main_globals, None, > [sagemath_doc_html-none] File "/usr/lib/python3.9/runpy.py", line 87, in > _run_code > [sagemath_doc_html-none] exec(code, run_globals) > [sagemath_doc_html-none] File > "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/__main__.py", > line 2, in <module> > [sagemath_doc_html-none] main() > [sagemath_doc_html-none] File > "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/__init__.py", > line 1815, in main > [sagemath_doc_html-none] builder() > [sagemath_doc_html-none] File > "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/__init__.py", > line 822, in _wrapper > [sagemath_doc_html-none] getattr(DocBuilder, build_type)(self, *args, > **kwds) > [sagemath_doc_html-none] File > "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/__init__.py", > line 133, in f > [sagemath_doc_html-none] runsphinx() > [sagemath_doc_html-none] File > "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/sphinxbuild.py", > line 323, in runsphinx > [sagemath_doc_html-none] sys.stderr.raise_errors() > [sagemath_doc_html-none] File > "/usr/local/sage-9/local/var/lib/sage/venv-python3.9/lib/python3.9/site-packages/sage_docbuild/sphinxbuild.py", > line 258, in raise_errors > [sagemath_doc_html-none] raise OSError(self._error) > [sagemath_doc_html-none] OSError: WARNING: autodoc: failed to import module > 'giac' from module 'sage.libs'; the following exception was raised: > [sagemath_doc_html-none] > [sagemath_doc_html-none] Note: incremental documentation builds sometimes > cause spurious > [sagemath_doc_html-none] error messages. To be certain that these are > real errors, run > [sagemath_doc_html-none] "make doc-clean" first and try again. > [sagemath_doc_html-none] make[6]: *** [Makefile:20 : > doc-inventory--reference-libs] Erreur 1 > [sagemath_doc_html-none] make[5]: *** [Makefile:37 : doc-inventory-reference] > Erreur 2 > make[4]: *** [Makefile:2789 : sagemath_doc_html-SAGE_DOCS-no-deps] Erreur 2 > make[3]: *** [Makefile:2789 : > /usr/local/sage-9/local/var/lib/sage/installed/sagemath_doc_html-none] Erreur > 2 > make[2]: *** [Makefile:2332 : all-start] Erreur 2 > make[2] : on quitte le répertoire « /usr/local/sage-9/build/make » > > real 18m33,136s > user 29m24,260s > sys 1m6,712s > *************************************************************** > Error building Sage. > > The following package(s) may have failed to build (not necessarily > during this run of 'make all-start'): > > It is safe to delete any log files and build directories, but they > contain information that is helpful for debugging build problems. > WARNING: If you now run 'make' again, the build directory of the > same version of the package will, by default, be deleted. Set the > environment variable SAGE_KEEP_BUILT_SPKGS=yes to prevent this. > > make[1]: *** [Makefile:39 : all-start] Erreur 1 > make[1] : on quitte le répertoire « /usr/local/sage-9 » > make: *** [Makefile:13 : all] Erreur 2 > ``` > > Suggestions ? > > >> >> On Thursday, December 9, 2021 at 12:18:02 PM UTC-8 Emmanuel Charpentier >> wrote: >>> >>> A recent upgrade of Debian testing seems to have broken Sage, which does >>> not find libgsl.so.25 Crash report attached. >>> >>> An attempt at make -b also fails (see attached install.log). >>> >>> The worse is : >>> >>> charpent@zen-book-flip:/usr/local/sage-9$ locate libgsl.so >>> >>> /usr/lib/x86_64-linux-gnu/libgsl.so >>> >>> /usr/lib/x86_64-linux-gnu/libgsl.so.25 >>> >>> /usr/lib/x86_64-linux-gnu/libgsl.so.25.0.0 >>> >>> charpent@zen-book-flip:/usr/local/sage-9$ dpkg -l "*libgsl*" >>> >>> Souhait=inconnU/Installé/suppRimé/Purgé/H=à garder >>> >>> | >>> État=Non/Installé/fichier-Config/dépaqUeté/échec-conFig/H=semi-installé/W=att> >>> >>> |/ Err?=(aucune)/besoin Réinstallation (État,Err: majuscule=mauvais) >>> >>> ||/ Nom Version Architecture Description >>> >>> +++-==================-============-============-==============================> >>> >>> ii libgsl-dev 2.7.1+dfsg-3 amd64 GNU Scientific Library >>> (GSL) -> >>> >>> un libgsl0 <aucune> <aucune> (aucune description n'est >>> disp> >>> >>> un libgsl0-dev <aucune> <aucune> (aucune description n'est >>> disp> >>> >>> un libgsl0ldbl <aucune> <aucune> (aucune description n'est >>> disp> >>> >>> un libgsl2 <aucune> <aucune> (aucune description n'est >>> disp> >>> >>> un libgsl23 <aucune> <aucune> (aucune description n'est >>> disp> >>> >>> ii libgsl27:amd64 2.7.1+dfsg-3 amd64 GNU Scientific Library >>> (GSL) -> >>> >>> ii libgslcblas0:amd64 2.7.1+dfsg-3 amd64 GNU Scientific Library >>> (GSL) -> >>> >>> >>> I'm a bit at loss... >>> > -- > You received this message because you are subscribed to the Google Groups > "sage-support" group. > To unsubscribe from this group and stop receiving emails from it, send an > email to sage-support+unsubscr...@googlegroups.com. > To view this discussion on the web visit > https://groups.google.com/d/msgid/sage-support/f93cf900-d04f-4a70-9222-ccd0712c4bfan%40googlegroups.com. -- You received this message because you are subscribed to the Google Groups "sage-support" group. 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