Using conda on macOS 12.4 (with Apple silicon) I get the attached error after
installing sage with:
conda create -n sagetest sage
conda activate sagetest
sage
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***************************************************************************
IPython post-mortem report
{'commit_hash': 'fd4cac190',
'commit_source': 'installation',
'default_encoding': 'utf-8',
'ipython_path':
'/Users/rparini/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/IPython',
'ipython_version': '7.33.0',
'os_name': 'posix',
'platform': 'macOS-12.4-arm64-arm-64bit',
'sys_executable': '/Users/rparini/opt/miniconda3/envs/sagetest/bin/python',
'sys_platform': 'darwin',
'sys_version': '3.9.13 | packaged by conda-forge | (main, May 27 2022, '
'17:00:33) \n'
'[Clang 13.0.1 ]'}
***************************************************************************
***************************************************************************
Crash traceback:
---------------------------------------------------------------------------
---------------------------------------------------------------------------
ImportErrorPython 3.9.13: /Users/rparini/opt/miniconda3/envs/sagetest/bin/python
Sun Aug 21 23:32:03 2022
A problem occurred executing Python code. Here is the sequence of function
calls leading up to the error, with the most recent (innermost) call last.
~/opt/miniconda3/envs/sagetest/bin/sage-ipython in <module>
1 #!/Users/rparini/opt/miniconda3/envs/sagetest/bin/python
2 # -*- coding: utf-8 -*-
3 """
4 Sage IPython startup script.
5 """
6
7 # Display startup banner. Do this before anything else to give the user
8 # early feedback that Sage is starting.
9 from sage.misc.banner import banner
10 banner()
11
12 from sage.repl.interpreter import SageTerminalApp
13
14 app = SageTerminalApp.instance()
---> 15 app.initialize()
global app.initialize = <bound method TerminalIPythonApp.initialize of
<sage.repl.interpreter.SageTerminalApp object at 0x1032dbdf0>>
16 app.start()
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/traitlets/config/application.py
in inner(app=<sage.repl.interpreter.SageTerminalApp object>, *args=(),
**kwargs={})
95 IS_PYTHONW = sys.executable and sys.executable.endswith("pythonw.exe")
96
97
98 def catch_config_error(method):
99 """Method decorator for catching invalid config
(Trait/ArgumentErrors) during init.
100
101 On a TraitError (generally caused by bad config), this will print
the trait's
102 message, and exit the app.
103
104 For use on init methods, to prevent invoking excepthook on invalid
input.
105 """
106
107 @functools.wraps(method)
108 def inner(app, *args, **kwargs):
109 try:
--> 110 return method(app, *args, **kwargs)
global method = undefined
app = <sage.repl.interpreter.SageTerminalApp object at 0x1032dbdf0>
args = ()
kwargs = {}
111 except (TraitError, ArgumentError) as e:
112 app.log.fatal("Bad config encountered during
initialization: %s", e)
113 app.log.debug("Config at the time: %s", app.config)
114 app.exit(1)
115
116 return inner
117
118
119 class ApplicationError(Exception):
120 pass
121
122
123 class LevelFormatter(logging.Formatter):
124 """Formatter with additional `highlevel` record
125
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/IPython/terminal/ipapp.py
in initialize(self=<sage.repl.interpreter.SageTerminalApp object>, argv=None)
304
305 return super(TerminalIPythonApp, self).parse_command_line(argv)
306
307 @catch_config_error
308 def initialize(self, argv=None):
309 """Do actions after construct, but before starting the app."""
310 super(TerminalIPythonApp, self).initialize(argv)
311 if self.subapp is not None:
312 # don't bother initializing further, starting subapp
313 return
314 # print self.extra_args
315 if self.extra_args and not self.something_to_run:
316 self.file_to_run = self.extra_args[0]
317 self.init_path()
318 # create the shell
--> 319 self.init_shell()
self.init_shell = <bound method SageTerminalApp.init_shell of
<sage.repl.interpreter.SageTerminalApp object at 0x1032dbdf0>>
320 # and draw the banner
321 self.init_banner()
322 # Now a variety of things that happen after the banner is
printed.
323 self.init_gui_pylab()
324 self.init_extensions()
325 self.init_code()
326
327 def init_shell(self):
328 """initialize the InteractiveShell instance"""
329 # Create an InteractiveShell instance.
330 # shell.display_banner should always be False for the terminal
331 # based app, because we call shell.show_banner() by hand below
332 # so the banner shows *before* all extension loading stuff.
333 self.shell = self.interactive_shell_class.instance(parent=self,
334 profile_dir=self.profile_dir,
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/repl/interpreter.py
in init_shell(self=<sage.repl.interpreter.SageTerminalApp object>)
772
773 # Load the %lprun extension if available
774 try:
775 import line_profiler
776 assert line_profiler # silence pyflakes
777 except ImportError:
778 pass
779 else:
780 self.extensions.append('line_profiler')
781
782 if self.shell.has_sage_extensions:
783 self.extensions.remove(SAGE_EXTENSION)
784
785 # load sage extension here to get a crash if
786 # something is wrong with the sage library
--> 787 self.shell.extension_manager.load_extension(SAGE_EXTENSION)
self.shell.extension_manager.load_extension = <bound method
ExtensionManager.load_extension of <IPython.core.extensions.ExtensionManager
object at 0x1108114f0>>
global SAGE_EXTENSION = 'sage'
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/IPython/core/extensions.py
in load_extension(self=<IPython.core.extensions.ExtensionManager object>,
module_str='sage')
72 if module_str in self.loaded:
73 return "already loaded"
74
75 from IPython.utils.syspathcontext import prepended_to_syspath
76
77 with self.shell.builtin_trap:
78 if module_str not in sys.modules:
79 with prepended_to_syspath(self.ipython_extension_dir):
80 mod = import_module(module_str)
81 if
mod.__file__.startswith(self.ipython_extension_dir):
82 print(("Loading extensions from {dir} is
deprecated. "
83 "We recommend managing extensions like
any "
84 "other Python packages, in
site-packages.").format(
85
dir=compress_user(self.ipython_extension_dir)))
86 mod = sys.modules[module_str]
---> 87 if self._call_load_ipython_extension(mod):
self._call_load_ipython_extension = <bound method
ExtensionManager._call_load_ipython_extension of
<IPython.core.extensions.ExtensionManager object at 0x1108114f0>>
mod = <module 'sage' from
'/Users/rparini/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/__init__.py'>
88 self.loaded.add(module_str)
89 else:
90 return "no load function"
91
92 def unload_extension(self, module_str):
93 """Unload an IPython extension by its module name.
94
95 This function looks up the extension's name in ``sys.modules``
and
96 simply calls ``mod.unload_ipython_extension(self)``.
97
98 Returns the string "no unload function" if the extension
doesn't define
99 a function to unload itself, "not loaded" if the extension
isn't loaded,
100 otherwise None.
101 """
102 if module_str not in self.loaded:
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/IPython/core/extensions.py
in _call_load_ipython_extension(self=<IPython.core.extensions.ExtensionManager
object>, mod=<module 'sage' from
'/Users/rparini/opt/minicond...st/lib/python3.9/site-packages/sage/__init__.py'>)
119 """
120 from IPython.utils.syspathcontext import prepended_to_syspath
121
122 if (module_str in self.loaded) and (module_str in sys.modules):
123 self.unload_extension(module_str)
124 mod = sys.modules[module_str]
125 with prepended_to_syspath(self.ipython_extension_dir):
126 reload(mod)
127 if self._call_load_ipython_extension(mod):
128 self.loaded.add(module_str)
129 else:
130 self.load_extension(module_str)
131
132 def _call_load_ipython_extension(self, mod):
133 if hasattr(mod, 'load_ipython_extension'):
--> 134 mod.load_ipython_extension(self.shell)
mod.load_ipython_extension = <function load_ipython_extension at
0x10363ce50>
self.shell = <sage.repl.interpreter.SageTerminalInteractiveShell object
at 0x1050402e0>
135 return True
136
137 def _call_unload_ipython_extension(self, mod):
138 if hasattr(mod, 'unload_ipython_extension'):
139 mod.unload_ipython_extension(self.shell)
140 return True
141
142 @undoc
143 def install_extension(self, url, filename=None):
144 """
145 Deprecated.
146 """
147 # Ensure the extension directory exists
148 raise DeprecationWarning(
149 '`install_extension` and the `install_ext` magic have been
deprecated since IPython 4.0'
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/repl/__init__.py
in
load_ipython_extension(*args=(<sage.repl.interpreter.SageTerminalInteractiveShell
object>,))
1 # IPython calls this when "%load_ext sage.repl" is used.
2 # The Sage application loads it when starting up.
3 def load_ipython_extension(*args):
4 import sage.repl.ipython_extension
----> 5 sage.repl.ipython_extension.load_ipython_extension(*args)
sage.repl.ipython_extension.load_ipython_extension = <function
load_ipython_extension at 0x110a72670>
args = (<sage.repl.interpreter.SageTerminalInteractiveShell object at
0x1050402e0>,)
6
7
8 # The above used to be in sage.__init__, allowing users to use
"%load_ext sage".
9 # But we are clearing out the __init__.py file as a preparation for
10 # making sage a native namespace package.
11 #
12 # So we make "%load_ext sage" work by monkey-patching the function
13 # into the sage package upon importing sage.repl.
14 import sage
15 sage.load_ipython_extension = load_ipython_extension
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/repl/ipython_extension.py
in wrapper(*args=(<sage.repl.interpreter.SageTerminalInteractiveShell
object>,), **kwargs={})
591 ....: if work:
592 ....: return 'foo worked'
593 ....: raise RuntimeError("foo didn't work")
594 sage: foo(False)
595 Traceback (most recent call last):
596 ...
597 RuntimeError: foo didn't work
598 sage: foo(True)
599 'foo worked'
600 sage: foo(False)
601 sage: foo(True)
602 """
603 @wraps(func)
604 def wrapper(*args, **kwargs):
605 if not wrapper.has_run:
--> 606 result = func(*args, **kwargs)
result = undefined
global func = undefined
args = (<sage.repl.interpreter.SageTerminalInteractiveShell object at
0x1050402e0>,)
kwargs = {}
607 wrapper.has_run = True
608 return result
609 wrapper.has_run = False
610 return wrapper
611
612
613 @run_once
614 def load_ipython_extension(ip):
615 """
616 Load the extension in IPython.
617 """
618 # this modifies ip
619 SageCustomizations(shell=ip)
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/repl/ipython_extension.py
in
load_ipython_extension(ip=<sage.repl.interpreter.SageTerminalInteractiveShell
object>)
604 def wrapper(*args, **kwargs):
605 if not wrapper.has_run:
606 result = func(*args, **kwargs)
607 wrapper.has_run = True
608 return result
609 wrapper.has_run = False
610 return wrapper
611
612
613 @run_once
614 def load_ipython_extension(ip):
615 """
616 Load the extension in IPython.
617 """
618 # this modifies ip
--> 619 SageCustomizations(shell=ip)
global SageCustomizations = <class
'sage.repl.ipython_extension.SageCustomizations'>
global shell = undefined
ip = <sage.repl.interpreter.SageTerminalInteractiveShell object at
0x1050402e0>
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/repl/ipython_extension.py
in __init__(self=<sage.repl.ipython_extension.SageCustomizations object>,
shell=<sage.repl.interpreter.SageTerminalInteractiveShell object>)
419 def __init__(self, shell=None):
420 """
421 Initialize the Sage plugin.
422 """
423 self.shell = shell
424
425 self.auto_magics = SageMagics(shell)
426 self.shell.register_magics(self.auto_magics)
427
428 import sage.misc.edit_module as edit_module
429 self.shell.set_hook('editor', edit_module.edit_devel)
430
431 self.init_inspector()
432 self.init_line_transforms()
433
--> 434 import sage.all # until sage's import hell is fixed
sage.all = undefined
435
436 self.shell.verbose_quit = True
437
438 self.register_interface_magics()
439
440 if SAGE_IMPORTALL == 'yes':
441 self.init_environment()
442
443 def register_interface_magics(self):
444 """
445 Register magics for each of the Sage interfaces
446 """
447 from sage.repl.interface_magic import InterfaceMagic
448 InterfaceMagic.register_all(self.shell)
449
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/all.py in
<module>
105
106 from sage.env import SAGE_ROOT, SAGE_SRC, SAGE_DOC_SRC, SAGE_LOCAL,
DOT_SAGE, SAGE_ENV
107
108
109 ###################################################################
110
111 # This import also sets up the interrupt handler
112 from cysignals.signals import (AlarmInterrupt, SignalError,
113 sig_on_reset as sig_on_count)
114
115 from time import sleep
116 from functools import reduce # in order to keep reduce in python3
117
118 import sage.misc.lazy_import
119
--> 120 from sage.misc.all import * # takes a while
global sage.misc.all = undefined
121 from sage.typeset.all import *
122 from sage.repl.all import *
123
124 from sage.misc.sh import sh
125
126 from sage.libs.all import *
127 from sage.data_structures.all import *
128 from sage.doctest.all import *
129
130 from sage.structure.all import *
131 from sage.rings.all import *
132 from sage.arith.all import *
133 from sage.matrix.all import *
134
135 from sage.symbolic.all import *
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/misc/all.py in
<module>
61
62 from .mathml import mathml
63
64 from .defaults import (set_default_variable_name,
65 series_precision, set_series_precision)
66
67 from .sage_eval import sage_eval, sageobj
68
69 from .sage_input import sage_input
70
71 lazy_import("sage.misc.cython", "cython_lambda")
72 lazy_import("sage.misc.cython", "cython_compile", "cython")
73
74 from .func_persist import func_persist
75
---> 76 from .functional import (additive_order,
global functional = undefined
global additive_order = undefined
global base_ring = undefined
global base_field = undefined
global basis = undefined
global category = undefined
global charpoly = undefined
global characteristic_polynomial = undefined
global coerce = undefined
global cyclotomic_polynomial = undefined
global decomposition = undefined
global denominator = undefined
global det = undefined
global dimension = undefined
global dim = undefined
global discriminant = undefined
global disc = undefined
global eta = undefined
global fcp = undefined
global gen = undefined
global gens = undefined
global hecke_operator = undefined
global image = undefined
global integral = undefined
global integrate = undefined
global integral_closure = undefined
global interval = undefined
global xinterval = undefined
global is_commutative = undefined
global is_even = undefined
global is_integrally_closed = undefined
global is_field = undefined
global is_odd = undefined
global kernel = undefined
global krull_dimension = undefined
global lift = undefined
global log = undefined
global log_b = undefined
global minimal_polynomial = undefined
global minpoly = undefined
global multiplicative_order = undefined
global ngens = undefined
global norm = undefined
global numerator = undefined
global numerical_approx = undefined
global n = undefined
global N = undefined
global objgens = undefined
global objgen = undefined
global order = undefined
global rank = undefined
global regulator = undefined
global round = undefined
global quotient = undefined
global quo = undefined
global isqrt = undefined
global squarefree_part = undefined
global sqrt = undefined
global symbolic_sum = undefined
global sum = undefined
global symbolic_prod = undefined
global product = undefined
global transpose = undefined
77 base_ring,
78 base_field,
79 basis,
80 category,
81 charpoly,
82 characteristic_polynomial,
83 coerce,
84 cyclotomic_polynomial,
85 decomposition,
86 denominator,
87 det,
88 dimension,
89 dim,
90 discriminant,
91 disc,
~/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/misc/functional.py
in <module>
11
12 - David Joyner (2005-12-20): More Examples
13 """
14 #
****************************************************************************
15 # Copyright (C) 2004 William Stein <wst...@gmail.com>
16 #
17 # This program is free software: you can redistribute it and/or modify
18 # it under the terms of the GNU General Public License as published by
19 # the Free Software Foundation, either version 2 of the License, or
20 # (at your option) any later version.
21 # https://www.gnu.org/licenses/
22 #
****************************************************************************
23 import builtins
24 import math
25
---> 26 from sage.rings.complex_double import CDF
global sage.rings.complex_double = undefined
global CDF = undefined
27 from sage.rings.real_double import RDF, RealDoubleElement
28 from sage.rings.integer_ring import ZZ
29 from sage.rings.integer import Integer
30 from sage.misc.superseded import deprecation
31
32
##############################################################################
33 # There are many functions on elements of a ring, which mathematicians
34 # usually write f(x), e.g., it is weird to write x.log() and natural
35 # to write log(x). The functions below allow for the more familiar
syntax.
36
##############################################################################
37
38
39 def additive_order(x):
40 """
41 Return the additive order of ``x``.
ImportError:
dlopen(/Users/rparini/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/rings/complex_double.cpython-39-darwin.so,
0x0002): Library not loaded: @rpath/libgsl.25.dylib
Referenced from:
/Users/rparini/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/rings/complex_double.cpython-39-darwin.so
Reason: tried:
'/Users/rparini/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/rings/../../../../libgsl.25.dylib'
(no such file),
'/Users/rparini/opt/miniconda3/envs/sagetest/lib/python3.9/site-packages/sage/rings/../../../../libgsl.25.dylib'
(no such file),
'/Users/rparini/opt/miniconda3/envs/sagetest/bin/../lib/libgsl.25.dylib' (no
such file),
'/Users/rparini/opt/miniconda3/envs/sagetest/bin/../lib/libgsl.25.dylib' (no
such file), '/usr/local/lib/libgsl.25.dylib' (no such file),
'/usr/lib/libgsl.25.dylib' (no such file)
***************************************************************************
History of session input:
*** Last line of input (may not be in above history):
