Picard release 1.117 14 July 2014 - Added a divide function to Math.Utils.
- Remove from Picard libraries that are found in htsjdk, since we can use those, as we are tightly coupled to htsjdk. - Updated RnaSeqMetricsCollector to make coverage collection optional. - Add travis-ci to Github project. - Explicitly implement Closeable on classes and interfaces with close(). - Enhance TabixReader: iterator moved to interface. - Added the Damerau-Levenshtein algorithm to calculate a distance between strings into StringUtil. - GitHub-51: Fix NPE if idxFn TabixReader ctor arg is non-null. - ReferenceSequenceFileWalker.java: Checks if ReferenceFile is indexed, and if so, uses it -Alec ------------------------------------------------------------------------------ Want fast and easy access to all the code in your enterprise? Index and search up to 200,000 lines of code with a free copy of Black Duck® Code Sight™ - the same software that powers the world's largest code search on Ohloh, the Black Duck Open Hub! Try it now. http://p.sf.net/sfu/bds _______________________________________________ Samtools-help mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/samtools-help
