I think it is because you use Oracle jdk instead of open-jdk, since
com.sun.tools.* is only contained in open-jdk not Oracle jdk.
On 6 Aug 2014 05:05, "Mark Wadsworth" <[email protected]> wrote:
> Hi,
> I am trying to produce a jar from the htsjdk using ant and the provided
> command. I am getting a compile error of an uncaught exception.
>
> Here is the error message.
>
> compile-samtools:
>
> [javac] /Users/mwads/KauweLab/htsjdk-1.118/build.xml:244: warning:
> 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set
> to false for repeatable builds
>
> [javac] Compiling 222 source files to
> /Users/mwads/KauweLab/htsjdk-1.118/classes
>
> [javac] warning: [options] bootstrap class path not set in conjunction
> with -source 1.6
>
> [javac]
>
> [javac]
>
> [javac] An annotation processor threw an uncaught exception.
>
> [javac] Consult the following stack trace for details.
>
> [javac] java.lang.NoClassDefFoundError:
> com/sun/tools/javac/main/OptionName
>
> [javac] at
> com.google.java.contract.core.apt.AnnotationProcessor.setupPaths(Unknown
> Source)
>
> [javac] at
> com.google.java.contract.core.apt.AnnotationProcessor.init(Unknown Source)
>
> [javac] at
> com.sun.tools.javac.processing.JavacProcessingEnvironment$ProcessorState.<init>(JavacProcessingEnvironment.java:500)
>
> [javac] at
> com.sun.tools.javac.processing.JavacProcessingEnvironment$DiscoveredProcessors$ProcessorStateIterator.next(JavacProcessingEnvironment.java:597)
>
> [javac] at
> com.sun.tools.javac.processing.JavacProcessingEnvironment.discoverAndRunProcs(JavacProcessingEnvironment.java:690)
>
> [javac] at
> com.sun.tools.javac.processing.JavacProcessingEnvironment.access$1800(JavacProcessingEnvironment.java:91)
>
> [javac] at
> com.sun.tools.javac.processing.JavacProcessingEnvironment$Round.run(JavacProcessingEnvironment.java:1035)
>
> [javac] at
> com.sun.tools.javac.processing.JavacProcessingEnvironment.doProcessing(JavacProcessingEnvironment.java:1176)
>
> [javac] at
> com.sun.tools.javac.main.JavaCompiler.processAnnotations(JavaCompiler.java:1173)
>
> [javac] at
> com.sun.tools.javac.main.JavaCompiler.compile(JavaCompiler.java:859)
>
> [javac] at com.sun.tools.javac.main.Main.compile(Main.java:523)
>
> [javac] at com.sun.tools.javac.main.Main.compile(Main.java:381)
>
> [javac] at com.sun.tools.javac.main.Main.compile(Main.java:370)
>
> [javac] at com.sun.tools.javac.main.Main.compile(Main.java:361)
>
> [javac] at com.sun.tools.javac.Main.compile(Main.java:56)
>
> [javac] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
>
> [javac] at
> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
>
> [javac] at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>
> [javac] at java.lang.reflect.Method.invoke(Method.java:483)
>
> [javac] at
> org.apache.tools.ant.taskdefs.compilers.Javac13.execute(Javac13.java:56)
>
> [javac] at
> org.apache.tools.ant.taskdefs.Javac.compile(Javac.java:1159)
>
> [javac] at org.apache.tools.ant.taskdefs.Javac.execute(Javac.java:935)
>
> [javac] at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292)
>
> [javac] at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
>
> [javac] at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>
> [javac] at java.lang.reflect.Method.invoke(Method.java:483)
>
> [javac] at
> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
>
> [javac] at org.apache.tools.ant.Task.perform(Task.java:348)
>
> [javac] at
> org.apache.tools.ant.taskdefs.Sequential.execute(Sequential.java:68)
>
> [javac] at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292)
>
> [javac] at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
>
> [javac] at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>
> [javac] at java.lang.reflect.Method.invoke(Method.java:483)
>
> [javac] at
> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
>
> [javac] at org.apache.tools.ant.Task.perform(Task.java:348)
>
> [javac] at
> org.apache.tools.ant.taskdefs.MacroInstance.execute(MacroInstance.java:396)
>
> [javac] at
> org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:292)
>
> [javac] at sun.reflect.GeneratedMethodAccessor4.invoke(Unknown Source)
>
> [javac] at
> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
>
> [javac] at java.lang.reflect.Method.invoke(Method.java:483)
>
> [javac] at
> org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
>
> [javac] at org.apache.tools.ant.Task.perform(Task.java:348)
>
> [javac] at org.apache.tools.ant.Target.execute(Target.java:435)
>
> [javac] at org.apache.tools.ant.Target.performTasks(Target.java:456)
>
> [javac] at
> org.apache.tools.ant.Project.executeSortedTargets(Project.java:1393)
>
> [javac] at
> org.apache.tools.ant.Project.executeTarget(Project.java:1364)
>
> [javac] at
> org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
>
> [javac] at
> org.apache.tools.ant.Project.executeTargets(Project.java:1248)
>
> [javac] at org.apache.tools.ant.Main.runBuild(Main.java:851)
>
> [javac] at org.apache.tools.ant.Main.startAnt(Main.java:235)
>
> [javac] at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
>
> [javac] at
> org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
>
> [javac] Caused by: java.lang.ClassNotFoundException:
> com.sun.tools.javac.main.OptionName
>
> [javac] at java.net.URLClassLoader$1.run(URLClassLoader.java:372)
>
> [javac] at java.net.URLClassLoader$1.run(URLClassLoader.java:361)
>
> [javac] at java.security.AccessController.doPrivileged(Native Method)
>
> [javac] at java.net.URLClassLoader.findClass(URLClassLoader.java:360)
>
> [javac] at java.lang.ClassLoader.loadClass(ClassLoader.java:424)
>
> [javac] at java.lang.ClassLoader.loadClass(ClassLoader.java:357)
>
> [javac] ... 52 more
>
>
> BUILD FAILED
>
> /Users/mwads/KauweLab/htsjdk-1.118/build.xml:100: The following error
> occurred while executing this line:
>
> /Users/mwads/KauweLab/htsjdk-1.118/build.xml:244: Compile failed; see the
> compiler error output for details.
>
>
> Thanks,
>
> Mark
>
>
> ------------------------------------------------------------------------------
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>
>
------------------------------------------------------------------------------
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Build stunning WinForms apps today!
Reboot your WinForms applications with our WinForms controls.
Build a bridge from your legacy apps to the future.
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