Hi, When I run wgsim, I see the following output. But I can't find a document for this format.
[wgsim_core] calculating the total length of the reference sequence... [wgsim_core] 1 sequences, total length: 10000 chr1 221 C M + chr1 882 A R + chr1 1670 A G - chr1 2526 C G - chr1 3783 A C - chr1 4231 C M + chr1 5227 T C - chr1 6371 T W + chr1 6403 C G - chr1 6621 T - + chr1 8055 T K + chr1 9956 C A - I understand that the 3rd column is IUPAC nucleotide code. Does "-" mean deletion? http://www.bioinformatics.org/sms/iupac.html What does the 4th column mean? Thanks. -- Regards, Peng ------------------------------------------------------------------------------ _______________________________________________ Samtools-help mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/samtools-help
