On 19 Aug 2014, at 17:33, Rieux, Adrien <[email protected]> wrote:
> I’m using the new SAMtools and BCFtools versions (v1.0).
> Is there a manual for SAMtools v1.0 ? I can find one for BCFtools
> (http://www.htslib.org/doc/) but not for SAMtools and it looks like some
> commands changed (compared with the previous version).
The updated manual page will have been installed to your computer when you
installed SAMtools 1.0 (assuming you used "make install"). You should be able
to read it just with
$ man samtools
if your environment is set up correctly. If not, you may need to add
$prefix/share/man (where $prefix is the directory tree you installed samtools
to) to $MANPATH.
If the worst comes to the worst, you can read it from where you unpacked the
source tarball with
$ man path/to/samtools-1.0/samtools.1
In the near future a copy of the man page will be available on the website (at
http://www.htslib.org/doc/) alongside the BCFtools one.
John
--
The Wellcome Trust Sanger Institute is operated by Genome Research
Limited, a charity registered in England with number 1021457 and a
company registered in England with number 2742969, whose registered
office is 215 Euston Road, London, NW1 2BE.
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