Is your file sorted? thanks
Laura On 25 August 2014 20:49, Richard Hayes <[email protected]> wrote: > Hi, > > I have a VCF file that is 53 Gb after compressing with bgzip. I am having > trouble indexing this with tabix version 0.2.5 (r1005). It runs for a while > but then quits with the message: > > [ti_index_build2] fail to create the index file. > > Any advice is appreciated. > > Thanks, > > Richard D. Hayes, Ph.D. > Joint Genome Institute / Lawrence Berkeley National Lab > http://phytozome.jgi.doe.gov > > ------------------------------------------------------------------------------ > Slashdot TV. > Video for Nerds. Stuff that matters. > http://tv.slashdot.org/ > _______________________________________________ > Samtools-help mailing list > [email protected] > https://lists.sourceforge.net/lists/listinfo/samtools-help > ------------------------------------------------------------------------------ Slashdot TV. Video for Nerds. Stuff that matters. http://tv.slashdot.org/ _______________________________________________ Samtools-help mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/samtools-help
