Picard release 1.120
September 8th, 2014
MAJOR CHANGE
As part of our switch to Github, the Picard project page has moved here:
http://broadinstitute.github.io/picard/
The latest release is available for download at the address above, or from
Github here:
https://github.com/broadinstitute/picard/releases
The HTSJDK java library also has a new page:
http://samtools.github.io/htsjdk/
Importantly, the following sites will no longer provide up-to-date picard
documentation / binaries:
http://picard.sourceforge.net/
http://sourceforge.net/projects/picard/files/
Release notes for version 1.120
- Made the release script push releases, javadoc, and the website
documentation to github pages rather than sourceforge.
- Added a tool to convert BED files to Picard Interval Lists.
- Moved CircularByteBuffer to its own class
- Modified MathUtil to have better named and more useful functions
- Fixed oversight in SANITIZE block resulting in NPE if there's only one
read group.
- Added an option to VCFWriter to write the entire FORMAT field, even if
the trailing values are missing and could therefore be trimmed. Also fixed
ParsingUtils.split() to correctly handle the case where the only delimiter
is the first character
Brad
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