Hi Adrian,

LD and a few other features have been temporarily lost in the transition
to htslib. It will be added back on popular demand, although I must say
it's not the highest priority for us at the moment, sorry.
:-(

Best,
Petr


On Tue, 2014-09-23 at 10:26 -0400, Adrian Pelin wrote: 
> Hello,
> 
> The older version of BCFTools had Linkage Disequilibrium analysis, is 
> that gone in the new 1.0 version?
> 
> Thanks,
> Adrian
> 
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