On 25 Sep 2014, at 16:29, Nils Homer <[email protected]> wrote:
> I see that the "samtools view -X" option is missing. This option is
> incredibly useful for debugging SAM/BAM (and now CRAM) records. It seems
> that this option was lost in the newest release. Would it be possible to add
> that back in?
The hex/symbolic flags functionality wasn't offered by htslib's sam_write1(),
so this functionality disappeared with the move to htslib. Yes, we're planning
to bring it back as time permits.
John
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