Hello, I've installed samtools-1.1 and htslib-1.1.
---------- $ samtools Program: samtools (Tools for alignments in the SAM format) Version: 1.1 (using htslib 1.1) ---------- I created a BAM file using: ---------- $ samtools sort -O bam -T SRR794854_samtoolssort -o SRR794854.bam -@ 8 -l 0 SRR794854.alignments [bam_sort_core] merging from 16 files... $ ---------- I then get a core dump when I try to create a BAM index file using: ---------- $ samtools index SRR794854.bam SRR794854.bai Samtools-htslib-API: bam_index_build2() not yet implemented Aborted (core dumped) ---------- Is there something obvious that I'm doing wrong? I did do some Googling and came across this post from a few months ago: https://www.biostars.org/p/102370/ which recommends using "the version on sourceforge still". I'm guessing that's referring to 0.1.19? Thanks, Derek ------------------------------------------------------------------------------ Meet PCI DSS 3.0 Compliance Requirements with EventLog Analyzer Achieve PCI DSS 3.0 Compliant Status with Out-of-the-box PCI DSS Reports Are you Audit-Ready for PCI DSS 3.0 Compliance? Download White paper Comply to PCI DSS 3.0 Requirement 10 and 11.5 with EventLog Analyzer http://pubads.g.doubleclick.net/gampad/clk?id=154622311&iu=/4140/ostg.clktrk _______________________________________________ Samtools-help mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/samtools-help
