Hi, My VCF file is annotatated with g1k frequency when such a frequency is available.
I want to select all variants with a frequency below a certain cutoff say 1%. Thus I want all lines where this condition is satisfied BUT I also need all the lines where there is no frequency annotation. Does anyone know how to do this? I have tried but it would seem like bcftools does not provide a way of testing whether a tag is present in the INFO field. Tim -- Tim Hughes PhD Medical Genetics Department Oslo University Hospital (Ullevål) Kirkeveien 166 0407 Oslo Norway
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