Hi,
I have a fasta file with mtDNA sequences. I want to convert them to bam
file.
I understood that I have:
First: use the command:
samtools faidx my_file.fasta # to generate my_file.fa.fai
Then, generate bam files (?)
samtools view -bt my_file.fa.fai aln.sam > aln.bam
My question: what is aln.sam file? what information I need to provide here?
Many thanks in advance,
Vanessa
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