Dear all,
I used
bwa mem -aCHMpP ...
in order to create .sam files for my pair-end reads data.
When I try to perform the command
samtools view -bS ...
in order to convert the .sam to .bam files, I get the following error message:
[E::sam_parse1] unrecognized type
[W::sam_read1] parse error at line 3
[main_samview] truncated file.
During my web search I could only find information about custom read
annotations leading to this error which I don't provide.
Could anybody tell me what I am missing?
Kind regards,
Marcel
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