On 2015-08-07 16:50, Edward Kwiatkowski wrote:
> I want to create a BAI on a CRAM. When I do > > samtools index -b xyz.cram > > it still gives me a CRAI instead. How can I use samtools to produce BAI's > from CRAM files? Samtools doesn't support use of BAI for CRAM. We use BAI for BAM and CRAI for CRAM only. Can you elaborate why you require BAI for CRAM please? Thanks, James -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE.
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