I'm not able to reproduce this. By mis-typing the file name, I can
get "[fai_build] fail to open the FASTA file <filename>", but I can't
get it to fail in [fai_open]. Using samtools1.2 Using htslib 1.2.1.
- tom blackwell -
On Thu, 10 Sep 2015, Manuel Riveros wrote:
> Hi
>
> After installing samtools 1.2 I've been trying to call SNPs from some data.
> Unfortunately I can't seem to make faidx to work.The command always return
> [fai_open] fail to open FASTA file
>
> I've tried using different reference files and editing the headers, but
> nothing seems to work.
> Any help would be appreciated
> Manuel
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