Dear Samtools Team,
After doing some whole genome SNP analysis with the Samtools 1.x pipeline, I
would like to use bcftools to annotate my SNPs. I have a gff file for my
reference genome, but I have noticed that some of the entries on it overlap,
i.e. there are multiple annotations for the same region. I was wondering how
this would be handled by bcftools and what would be your suggestions.
Sincerely,
Massimiliano S. Tagliamonte
Graduate Student
University of Florida
College of Veterinary Medicine
Department of Infectious Diseases and Pathology
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