On Thu, Jan 14, 2016 at 11:13:53PM +1000, Robert May wrote: > ## --------- ## > ## Platform. ## > ## --------- ## > > hostname = DESKTOP-14EL82S > uname -m = x86_64 > uname -r = 2.3.1(0.291/5/3) > uname -s = CYGWIN_NT-10.0 > uname -v = 2015-11-14 12:44
Ok ignore my last question as this answers it - you're using cygwin. Ugh! I haven't tested samtools on Windows for ages and support for it isn't exactly high on the priority list. You may have better luck using mingw+msys instead of cygwin as it gives a much saner environment without forcing users to do bizarre things to pathnames. Try the -std=c99 trick though first. That said, I have no idea if the code compiles under mingw either as I haven't tested it. Likely someone else in this mailing list will have more experience with Windows development. James -- James Bonfield ([email protected]) | Hora aderat briligi. Nunc et Slythia Tova | Plurima gyrabant gymbolitare vabo; A Staden Package developer: | Et Borogovorum mimzebant undique formae, https://sf.net/projects/staden/ | Momiferique omnes exgrabure Rathi. -- The Wellcome Trust Sanger Institute is operated by Genome Research Limited, a charity registered in England with number 1021457 and a company registered in England with number 2742969, whose registered office is 215 Euston Road, London, NW1 2BE. ------------------------------------------------------------------------------ Site24x7 APM Insight: Get Deep Visibility into Application Performance APM + Mobile APM + RUM: Monitor 3 App instances at just $35/Month Monitor end-to-end web transactions and take corrective actions now Troubleshoot faster and improve end-user experience. Signup Now! http://pubads.g.doubleclick.net/gampad/clk?id=267308311&iu=/4140 _______________________________________________ Samtools-help mailing list [email protected] https://lists.sourceforge.net/lists/listinfo/samtools-help
