fastq/a
samtools fastq [options] in.bam
samtools fasta [options] in.bam
Converts a BAM or CRAM into either FASTQ or FASTA format depending on
the command invoked.
using this command (0=zero fasta=.fa or.fai)
samtools fasta -n -0 out .fai in.fasta
the result I get if that the .fa or .fai file is created with o KB but the
fasta is printed to the screen.
I cant see any other options
any ideas
Bob May
DNA Projects I2b L415, I2c L596 HG, Spriggs of Cleve SA Family & Tyler Surname
and ISOGG YTree
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