Hell all,
I was wondering if there is an option (which I cannot find) to call
variants over a set of intervals or positions in addition to others that
the program would normally call and output to the VCF file.
As a practical example, you have a set of 96 medically relevant SNPs, but
only 40 or so would be output.
Since you'd like to know if the remaining 56 are not output since they are
poorly covered or simply homozygous reference, that would be a useful
option, I think.
Thank you in advance
-- Alex Predeus
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