Thank you so much for your quick response. Yes, the bcf file would need to be downloaded first.
Jack ---- Yuelin Jack Zhu On Mon, Aug 22, 2016 at 4:22 PM, Thomas W. Blackwell <[email protected]> wrote: > > I would try downloading the file and indexing your local copy. Unless I'm > mistaken, nothing in the bcftools documentation indicates that it should > work over an http: connection. > > - tom blackwell - > > On Mon, 22 Aug 2016, Yuelin Zhu wrote: > > Dear all, >> >> I got Segmentation fault whenever doing bcftools index on the following >> file: >> >> http://gbnci-abcc.ncifcrf.gov/fileman/temp/1348518/geno.TRA.bcf >> >> $ which bcftools >> >> /usr/local/apps/samtools/1.3.1/bin/bcftools >> >> $ bcftools index geno.TRA.bcf >> >> Segmentation fault >> >> Your insight will be greatly appreciated. >> >> Jack >> ---- >> Yuelin Jack Zhu >> >>
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