Hi,
For few days, I am trying to convert this OpenCV script to scikit-image without successes. The aim is to get the outline of the cells and fill it so I can measure region properties. import cv2 import numpy as np #image can be found in https://i.stack.imgur.com/afCDL.jpg filename = 'E:/afCDL.jpg' img = cv2.imread(filename) cv2.imwrite('E:/img.jpg',img) cv2.imshow("Original Image", img) gray = cv2.cvtColor(img,cv2.COLOR_BGR2GRAY) cv2.imwrite('E:/gray.jpg',gray) bi = cv2.bilateralFilter(gray,5,25,25) cv2.imwrite('E:/bi.jpg',bi) blur = cv2.GaussianBlur(bi,(25,25),0) cv2.imwrite('E:/blur.jpg',blur) dog = blur - bi cv2.imwrite('E:/DoG.jpg',dog) cv2.imshow("DOG Image", dog) kernel = np.ones((3,3),np.uint8) fill = cv2.morphologyEx(dog, cv2.MORPH_CLOSE, kernel) #Fill holes- DOES NOT WORK cv2.imshow("Fill", fill) removeNoise = cv2.morphologyEx(fill, cv2.MORPH_OPEN, kernel) #Remove noise cv2.imshow("remove Noise ", removeNoise) cv2.waitKey(0) cv2.destroyAllWindows() I will appreciate any help and if you someone have a better idea how to extract the cell outline it will be great. Thanks. -- You received this message because you are subscribed to the Google Groups "scikit-image" group. To unsubscribe from this group and stop receiving emails from it, send an email to scikit-image+unsubscr...@googlegroups.com. To post to this group, send an email to scikit-image@googlegroups.com. To view this discussion on the web, visit https://groups.google.com/d/msgid/scikit-image/d94385ca-52ef-4ed2-95a5-77730b0702e6%40googlegroups.com. For more options, visit https://groups.google.com/d/optout.
