On Wed, Oct 12, 2011 at 10:27:23AM +0100, Conrad Lee wrote:
>    Even better, he suggests (and I agree), would be to make this change
>    upstream, and replace scipy.cluster's hierarchy code with Müllner's faster
>    code. 

I agree.

>    Then scikit-learn could benefit simply by building on
>    scipy.cluster.hierarchy. 

It already does: we benched the two implementation and have a decision
rule that chooses the most efficient one.

>    This would mean that scikit-learn relies on
>    possibly hard-to-maintain C++ code. 

IMHO the hierarchical clustering code of scipy is already hard to
maintain.

>    I have no experience working with the scipy team, so I have a
>    question: where is the appropriate place to run this suggestion by them?
>     Should I just post my suggestion on the Scipy-Dev mailing list?

Yes, scipy-dev is the right place to hold such discussion. Also a pull
request to scipy should be prepared. Ideally, even if you don't submit a
pull request, it would be interesting to point to the code, so that the
discussion can be led on technical basis.

Cheers,

Gaël

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