Hi scikit-learn community,

I'm interested in reducing a large adjacency matrix (1M x 1M) to 2
dimensions (1M x 2)

This is very similar to force-based graph embedding (drawing):

http://en.wikipedia.org/wiki/Force-based_algorithms_(graph_drawing)

But instead of using force for optimization, i want to experiment w/
bayesian importance sampling.

I have a clear objective function:

http://www.smarttypes.org/blog/graph_reduction_linlog_nbody_simulation

I want to make this as efficient as possible, i would like to
eventually try this in CUDA, but for the immediate future i want to
use numpy and the parallelization gained from libblas + liblapack.

Curious if anyone can recommend an efficient SIS example?


Much, much appreciated,
Timmy Wilson
Cleveland, OH

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