apologies for the formatting... i've configured my account to receive the
digest and i don't know how to get back to the original message. response
in-line below:
Message: 6
Date: Fri, 11 May 2012 15:26:30 +0900
From: Mathieu Blondel <[email protected]>
Subject: Re: [Scikit-learn-general] __check_build error on sklearn
0.12 import
To: [email protected]
Message-ID:
<CAOKSrLyG0nPgyJ7u0cYerSHovi37rhNjv70G7miYVVo40r=m...@mail.gmail.com>
Content-Type: text/plain; charset="iso-8859-1"
On Fri, May 11, 2012 at 3:03 PM, W. Bryan Smith <[email protected]> wrote:
>> the source was pulled from git about 20 minutes before i sent the email.
>>
> I haven't tried to actually run "python setup.py install" so there may
> remain problems. But, have you tried to run "make clean" or "python
> setup.py clean" before installing?
>
> Mathieu
Thanks Mathieu,
I tried as you suggested (running clean) and still get the same import
error on __check_build. The output of running clean is in the attached
text file.
regards,
bryan
Warning: Assuming default configuration
(scikits/learn/{setup_scikits.learn,setup}.py was not found)Appending
scikits.learn configuration to
Ignoring attempt to set 'name' (from '' to 'scikits.learn')
Warning: Subpackage 'sklearn.__check_build' configuration returned as
'sklearn.check_build'Appending sklearn.check_build configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.check_build')
Warning: Assuming default configuration
(sklearn/svm/tests/{setup_tests,setup}.py was not found)Appending
sklearn.svm.tests configuration to sklearn.svm
Ignoring attempt to set 'name' (from 'sklearn.svm' to 'sklearn.svm.tests')
blas_opt_info:
FOUND:
extra_link_args = ['-Wl,-framework', '-Wl,Accelerate']
define_macros = [('NO_ATLAS_INFO', 3)]
extra_compile_args = ['-faltivec',
'-I/System/Library/Frameworks/vecLib.framework/Headers']
Warning: Assuming default configuration
(sklearn/svm/sparse/{setup_sparse,setup}.py was not found)Appending
sklearn.svm.sparse configuration to sklearn.svm
Ignoring attempt to set 'name' (from 'sklearn.svm' to 'sklearn.svm.sparse')
Appending sklearn.svm configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.svm')
Appending sklearn.datasets configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.datasets')
Warning: Assuming default configuration
(sklearn/datasets/tests/setup_datasets/{setup_datasets/tests,setup}.py was not
found)Appending sklearn.datasets/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.datasets/tests')
Warning: Assuming default configuration
(sklearn/feature_extraction/{setup_feature_extraction,setup}.py was not
found)Appending sklearn.feature_extraction configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.feature_extraction')
Warning: Assuming default configuration
(sklearn/feature_extraction/tests/setup_feature_extraction/{setup_feature_extraction/tests,setup}.py
was not found)Appending sklearn.feature_extraction/tests configuration to
sklearn
Ignoring attempt to set 'name' (from 'sklearn' to
'sklearn.feature_extraction/tests')
Appending sklearn.cluster configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.cluster')
Warning: Assuming default configuration
(sklearn/cluster/tests/setup_cluster/{setup_cluster/tests,setup}.py was not
found)Appending sklearn.cluster/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.cluster/tests')
Warning: Assuming default configuration
(sklearn/covariance/{setup_covariance,setup}.py was not found)Appending
sklearn.covariance configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.covariance')
Warning: Assuming default configuration
(sklearn/covariance/tests/setup_covariance/{setup_covariance/tests,setup}.py
was not found)Appending sklearn.covariance/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.covariance/tests')
Warning: Assuming default configuration
(sklearn/decomposition/{setup_decomposition,setup}.py was not found)Appending
sklearn.decomposition configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.decomposition')
Warning: Assuming default configuration
(sklearn/decomposition/tests/setup_decomposition/{setup_decomposition/tests,setup}.py
was not found)Appending sklearn.decomposition/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.decomposition/tests')
Warning: Assuming default configuration
(sklearn/ensemble/tests/{setup_tests,setup}.py was not found)Appending
sklearn.ensemble.tests configuration to sklearn.ensemble
Ignoring attempt to set 'name' (from 'sklearn.ensemble' to
'sklearn.ensemble.tests')
Appending sklearn.ensemble configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.ensemble')
Warning: Assuming default configuration
(sklearn/ensemble/tests/setup_ensemble/{setup_ensemble/tests,setup}.py was not
found)Appending sklearn.ensemble/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.ensemble/tests')
Warning: Assuming default configuration
(sklearn/feature_selection/{setup_feature_selection,setup}.py was not
found)Appending sklearn.feature_selection configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.feature_selection')
Warning: Assuming default configuration
(sklearn/feature_selection/tests/setup_feature_selection/{setup_feature_selection/tests,setup}.py
was not found)Appending sklearn.feature_selection/tests configuration to
sklearn
Ignoring attempt to set 'name' (from 'sklearn' to
'sklearn.feature_selection/tests')
Appending sklearn.utils.sparsetools configuration to sklearn.utils
Ignoring attempt to set 'name' (from 'sklearn.utils' to
'sklearn.utils.sparsetools')
Appending sklearn.utils configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.utils')
Warning: Assuming default configuration
(sklearn/utils/tests/setup_utils/{setup_utils/tests,setup}.py was not
found)Appending sklearn.utils/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.utils/tests')
Warning: Assuming default configuration
(sklearn/externals/joblib/{setup_joblib,setup}.py was not found)Appending
sklearn.externals.joblib configuration to sklearn.externals
Ignoring attempt to set 'name' (from 'sklearn.externals' to
'sklearn.externals.joblib')
Warning: Assuming default configuration
(sklearn/externals/joblib/test/setup_joblib/{setup_joblib/test,setup}.py was
not found)Appending sklearn.externals.joblib/test configuration to
sklearn.externals
Ignoring attempt to set 'name' (from 'sklearn.externals' to
'sklearn.externals.joblib/test')
Appending sklearn.externals configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.externals')
Warning: Assuming default configuration
(sklearn/mixture/{setup_mixture,setup}.py was not found)Appending
sklearn.mixture configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.mixture')
Warning: Assuming default configuration
(sklearn/mixture/tests/setup_mixture/{setup_mixture/tests,setup}.py was not
found)Appending sklearn.mixture/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.mixture/tests')
Warning: Assuming default configuration
(sklearn/gaussian_process/{setup_gaussian_process,setup}.py was not
found)Appending sklearn.gaussian_process configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.gaussian_process')
Warning: Assuming default configuration
(sklearn/gaussian_process/tests/setup_gaussian_process/{setup_gaussian_process/tests,setup}.py
was not found)Appending sklearn.gaussian_process/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to
'sklearn.gaussian_process/tests')
Appending sklearn.neighbors configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.neighbors')
Warning: Assuming default configuration
(sklearn/manifold/{setup_manifold,setup}.py was not found)Appending
sklearn.manifold configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.manifold')
Warning: Assuming default configuration
(sklearn/metrics/{setup_metrics,setup}.py was not found)Appending
sklearn.metrics configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.metrics')
Warning: Assuming default configuration
(sklearn/semi_supervised/{setup_semi_supervised,setup}.py was not
found)Appending sklearn.semi_supervised configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.semi_supervised')
Warning: Assuming default configuration
(sklearn/tree/tests/{setup_tests,setup}.py was not found)Appending
sklearn.tree.tests configuration to sklearn.tree
Ignoring attempt to set 'name' (from 'sklearn.tree' to 'sklearn.tree.tests')
Appending sklearn.tree configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.tree')
Warning: Assuming default configuration
(sklearn/tree/tests/setup_tree/{setup_tree/tests,setup}.py was not
found)Appending sklearn.tree/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.tree/tests')
Warning: Assuming default configuration
(sklearn/metrics/tests/setup_metrics/{setup_metrics/tests,setup}.py was not
found)Appending sklearn.metrics/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.metrics/tests')
Warning: Assuming default configuration
(sklearn/metrics/tests/setup_metrics/{setup_metrics/tests,setup}.py was not
found)Appending sklearn.metrics/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.metrics/tests')
Warning: Assuming default configuration
(sklearn/metrics/cluster/setup_metrics/{setup_metrics/cluster,setup}.py was not
found)Appending sklearn.metrics/cluster configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.metrics/cluster')
Warning: Assuming default configuration
(sklearn/metrics/cluster/tests/setup_metrics/cluster/{setup_metrics/cluster/tests,setup}.py
was not found)Appending sklearn.metrics/cluster/tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to
'sklearn.metrics/cluster/tests')
Warning: Assuming default configuration
(sklearn/linear_model/tests/{setup_tests,setup}.py was not found)Appending
sklearn.linear_model.tests configuration to sklearn.linear_model
Ignoring attempt to set 'name' (from 'sklearn.linear_model' to
'sklearn.linear_model.tests')
Warning: Assuming default configuration
(sklearn/linear_model/sparse/tests/{setup_tests,setup}.py was not
found)Appending sklearn.linear_model.sparse.tests configuration to
sklearn.linear_model.sparse
Ignoring attempt to set 'name' (from 'sklearn.linear_model.sparse' to
'sklearn.linear_model.sparse.tests')
Appending sklearn.linear_model.sparse configuration to sklearn.linear_model
Ignoring attempt to set 'name' (from 'sklearn.linear_model' to
'sklearn.linear_model.sparse')
Appending sklearn.linear_model configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.linear_model')
Appending sklearn.utils.sparsetools configuration to sklearn.utils
Ignoring attempt to set 'name' (from 'sklearn.utils' to
'sklearn.utils.sparsetools')
Appending sklearn.utils configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.utils')
Warning: Assuming default configuration (sklearn/tests/{setup_tests,setup}.py
was not found)Appending sklearn.tests configuration to sklearn
Ignoring attempt to set 'name' (from 'sklearn' to 'sklearn.tests')
Appending sklearn configuration to
Ignoring attempt to set 'name' (from '' to 'sklearn')
running clean------------------------------------------------------------------------------
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