We are getting a few errors like this:

Query error: Lock wait timeout exceeded; try restarting transaction. Query: 
UPDATE ezcontentobject_tree SET modified_subnode=1279768018 WHERE node_id='1' 
OR node_id='2' OR node_id='220' OR node_id='84458'

once in a while, does it have to do with high DB traffic preventing the lock 
from being set.

And if so, can the lock timeout be increased somehow?

Stefan
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