Re: [Bioc-devel] Changing the name of a package

2014-09-11 Thread Tom Hardcastle 

Hi Dan,

Could you rename it to riboSeqR, please?

Thanks,

Tom

On 10/09/14 18:25, Dan Tenenbaum wrote:

Hi Thomas,

- Original Message -

From: "Thomas J Hardcastle" 
To: bioc-devel@r-project.org
Sent: Monday, September 8, 2014 5:19:09 PM
Subject: [Bioc-devel] Changing the name of a package

I have a package on the development build called riboSeq; my
biological
collaborators have since informed me that this name might cause
confusion as this is also the standard name for particular sequencing
techniques. Is it possible to easily change the name of this package?


This should not be a problem, since your package has not yet undergone a 
release. Let me know what you want the new name to be and I will rename the 
directory in svn and make sure that your svn permissions apply to that new 
directory. Then you'll want to go through the package and change its name 
throughout, most importantly in the Package: field of the DESCRIPTION file.

Dan



Best regards,

Tom Hardcastle



--
Dr. Thomas J. Hardcastle

Department of Plant Sciences
University of Cambridge
Downing Street
Cambridge, CB2 3EA
United Kingdom

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--
Dr. Thomas J. Hardcastle

Department of Plant Sciences
University of Cambridge
Downing Street
Cambridge, CB2 3EA
United Kingdom

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[Bioc-devel] some turbulences due to IRanges/S4Vectors split

2014-09-11 Thread Hervé Pagès 

Hi developers,

I recently moved SimpleList and DataFrame from IRanges to S4Vectors.
That breaks a number of packages as you can see on today's build/check
report:

  http://bioconductor.org/checkResults/3.0/bioc-LATEST/

Will fix today. Sorry for the inconvenience.

Cheers,
H.

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Re: [Bioc-devel] Changing the name of a package

2014-09-11 Thread Dan Tenenbaum 


- Original Message -
> From: "Tom Hardcastle" 
> To: "Dan Tenenbaum" 
> Cc: bioc-devel@r-project.org
> Sent: Thursday, September 11, 2014 3:25:38 AM
> Subject: Re: [Bioc-devel] Changing the name of a package
> 
> Hi Dan,
> 
> Could you rename it to riboSeqR, please?
> 

OK, I've done this. I also changed the DESCRIPTION file so that riboSeqR is the 
value of the Package: field.

You should go through the remainder of the package and change the package name 
where appropriate.

Dan


> Thanks,
> 
> Tom
> 
> On 10/09/14 18:25, Dan Tenenbaum wrote:
> > Hi Thomas,
> >
> > - Original Message -
> >> From: "Thomas J Hardcastle" 
> >> To: bioc-devel@r-project.org
> >> Sent: Monday, September 8, 2014 5:19:09 PM
> >> Subject: [Bioc-devel] Changing the name of a package
> >>
> >> I have a package on the development build called riboSeq; my
> >> biological
> >> collaborators have since informed me that this name might cause
> >> confusion as this is also the standard name for particular
> >> sequencing
> >> techniques. Is it possible to easily change the name of this
> >> package?
> >>
> > This should not be a problem, since your package has not yet
> > undergone a release. Let me know what you want the new name to be
> > and I will rename the directory in svn and make sure that your svn
> > permissions apply to that new directory. Then you'll want to go
> > through the package and change its name throughout, most
> > importantly in the Package: field of the DESCRIPTION file.
> >
> > Dan
> >
> >
> >> Best regards,
> >>
> >> Tom Hardcastle
> >>
> >>
> >>
> >> --
> >> Dr. Thomas J. Hardcastle
> >>
> >> Department of Plant Sciences
> >> University of Cambridge
> >> Downing Street
> >> Cambridge, CB2 3EA
> >> United Kingdom
> >>
> >> ___
> >> Bioc-devel@r-project.org mailing list
> >> https://stat.ethz.ch/mailman/listinfo/bioc-devel
> >>
> 
> 
> --
> Dr. Thomas J. Hardcastle
> 
> Department of Plant Sciences
> University of Cambridge
> Downing Street
> Cambridge, CB2 3EA
> United Kingdom
> 
>

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