Re: [Bioc-devel] Registering native routines with Rcpp

[Vincent Carey]

some more news on registration

https://stat.ethz.ch/pipermail/r-devel/2017-February/073755.html

On Mon, Feb 6, 2017 at 12:08 PM, Kevin Ushey  wrote:

> For what it's worth, the Rcpp team is aware that CRAN will soon be emitting
> NOTEs for packages not registering native routines as well -- it's
> currently tracked at
>
> https://github.com/RcppCore/Rcpp/issues/636
>
> The main difficulty on the Rcpp side is ensuring that we play well with
> users who already have an 'R_init_*' function, although that case should be
> relatively rare.
>
> Best,
> Kevin
>
> On Mon, Feb 6, 2017 at 7:17 AM, Kasper Daniel Hansen <
> kasperdanielhan...@gmail.com> wrote:
>
> > Might be worth it to take this one over to Rcpp-devel and get some
> feedback
> > there?
> >
> > Best,
> > Kasper
> >
> > On Mon, Feb 6, 2017 at 5:22 AM, Aaron Taudt 
> wrote:
> >
> > > Dear all,
> > >
> > > I am trying to register the native routines in my package as
> recommended
> > by
> > > BiocCheck. I have done this previously for a package using C++ code.
> > > However, for this package I am using Rcpp and I cannot figure out how
> to
> > > register my native routines.
> > >
> > > My first problem is that I don't know which routines I actually have to
> > > register. Is it ithe ones in the auto-generated "RcppExports.cpp" file,
> > or
> > > the ones that the have the "// [[Rcpp::export]]" tag?
> > >
> > > I have tried the Rcpp.package.skeleton() function, but this package
> > doesn't
> > > have native routine registration.
> > >
> > > Thanks for your help.
> > >
> > > Aaron
> > >
> > > [[alternative HTML version deleted]]
> > >
> > > ___
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> > >
> >
> > [[alternative HTML version deleted]]
> >
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> >
>
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Re: [Bioc-devel] Registering native routines with Rcpp

[Kasper Daniel Hansen]

Might be worth it to take this one over to Rcpp-devel and get some feedback
there?

Best,
Kasper

On Mon, Feb 6, 2017 at 5:22 AM, Aaron Taudt  wrote:

> Dear all,
>
> I am trying to register the native routines in my package as recommended by
> BiocCheck. I have done this previously for a package using C++ code.
> However, for this package I am using Rcpp and I cannot figure out how to
> register my native routines.
>
> My first problem is that I don't know which routines I actually have to
> register. Is it ithe ones in the auto-generated "RcppExports.cpp" file, or
> the ones that the have the "// [[Rcpp::export]]" tag?
>
> I have tried the Rcpp.package.skeleton() function, but this package doesn't
> have native routine registration.
>
> Thanks for your help.
>
> Aaron
>
> [[alternative HTML version deleted]]
>
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> Bioc-devel@r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/bioc-devel
>

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Re: [Bioc-devel] Registering native routines with Rcpp

[Martin Morgan]

On 02/06/2017 05:22 AM, Aaron Taudt wrote:

Dear all,

I am trying to register the native routines in my package as recommended by
BiocCheck. I have done this previously for a package using C++ code.
However, for this package I am using Rcpp and I cannot figure out how to
register my native routines.

My first problem is that I don't know which routines I actually have to
register. Is it ithe ones in the auto-generated "RcppExports.cpp" file, or
the ones that the have the "// [[Rcpp::export]]" tag?

I have tried the Rcpp.package.skeleton() function, but this package doesn't
have native routine registration.


Registering native routines is a best practice, but not required and 
difficult (I think) to accomplish with Rcpp; I would not expend more 
effort on this.


Martin



Thanks for your help.

Aaron

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[Bioc-devel] Registering native routines with Rcpp

[Aaron Taudt]

Dear all,

I am trying to register the native routines in my package as recommended by
BiocCheck. I have done this previously for a package using C++ code.
However, for this package I am using Rcpp and I cannot figure out how to
register my native routines.

My first problem is that I don't know which routines I actually have to
register. Is it ithe ones in the auto-generated "RcppExports.cpp" file, or
the ones that the have the "// [[Rcpp::export]]" tag?

I have tried the Rcpp.package.skeleton() function, but this package doesn't
have native routine registration.

Thanks for your help.

Aaron

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