[ccp4bb] creating alternate conformations using PyMol
Hi all, I am working on generating alternate conformations for a particular loop region of a protein. I just want to move this region into different conformations in order to show the possible states it can occur in. Is there an easy way to do this in pymol which will help me rotate only a small fragment of the protein while keeping everything else static. thanks for the help in advance! Neeraj -- Neeraj Kapoor TPCB Graduate Fellow Sakmar Lab/ Molecular Biology & Biochemistry The Rockefeller University 1230 York Avenue, RRB 510 New York, NY 10021 lab.1.212.327.8284:fax.7904 mobile: 917.535.2030 http://www.rockefeller.edu/labheads/sakmar/sakmar-lab.html
Re: [ccp4bb] creating alternate conformations using PyMol
Dear Neeraj -- On 26 Sep 2008, at 22:48, Neeraj wrote: Is there an easy way to do this in pymol which will help me rotate only a small fragment of the protein while keeping everything else static. What you can do is to generate two coordinate files, one without your loop, one with, and more around only the one with your loop... HTH Kind regards. -- Leo -- Chavas Leonard, Ph.D. @ home Research Associate Marie Curie Actions Fellow Faculty of Life Sciences The University of Manchester The Michael Smith Building Oxford Road Manchester Lancashire M13 9PT Tel: +44(0)161-275-1586 e-mail: [EMAIL PROTECTED] http://personalpages.manchester.ac.uk/staff/leonard.chavas/
