Bug#1056701: ITP: roc-toolkit -- real-time audio streaming over the network
Package: wnpp Severity: wishlist Owner: Dylan Aïssi X-Debbugs-Cc: debian-de...@lists.debian.org, debian-multime...@lists.debian.org * Package name: roc-toolkit * URL: https://roc-streaming.org/ * License: MPL-2.0 Roc is a network transport, highly specialized for the real-time streaming use case. The user writes the stream to the one end and reads it from another end, and Roc deals with all the complexity of the task of delivering data in time and with no loss. Encoding, decoding, adjusting rates, restoring losses - all these are performed transparently under the hood. This package is maintained by Debian Multimedia Team at: https://salsa.debian.org/multimedia-team/roc-toolkit
Bug#933354: RFC: onnxruntime packaging
Hello, I have finalized [1] the package of onnxruntime and have sent it to the NEW queue [2]. I only enabled features I need. A review and/or improvements are welcome :-). Best, Dylan [1] https://salsa.debian.org/deeplearning-team/onnxruntime [2] https://ftp-master.debian.org/new/onnxruntime_1.12.1+dfsg-1.html
Bug#1031002: ITP: libavtp -- Audio Video Transport Protocol (AVTP)
Package: wnpp Severity: wishlist Owner: Dylan Aïssi X-Debbugs-Cc: debian-de...@lists.debian.org, debian-multime...@lists.debian.org * Package name: libavtp * URL: https://github.com/Avnu/libavtp * License: BSD-3-clause Audio Video Transport Protocol (AVTP) specified in IEEE 1722-2016 spec. Remark: This package is maintained by Debian Multimedia Team at: https://salsa.debian.org/multimedia-team/libavtp
Bug#888078: RFA: easyprocess
Hello Malik, On Fri, 11 Nov 2022 19:19:34 +0100 Malik wrote: > > I would also like to help to maintain this package, is it still open to be > maintained? > I am not the previous maintainer of easyprocess, but the RFA is still open so feel free to do the work without asking :) and then make enough kindly noise to get it merged/uploaded if you lack permissions. BTW, I left a comment on your MR for easyprocess. Dylan
Bug#1021532: ITP: liblc3 -- Low Complexity Communication Codec (LC3)
Package: wnpp Severity: wishlist Owner: Dylan Aïssi X-Debbugs-Cc: debian-de...@lists.debian.org, debian-multime...@lists.debian.org * Package name: liblc3 Version: 1.0.1 * URL : https://github.com/google/liblc3 * License : Apache-2.0 Description: Low Complexity Communication Codec LC3 is an efficient low latency audio codec. This codec is required to add Bluetooth LE Audio support to pipewire. Remark: This package is maintained by Debian Multimedia Team at: https://salsa.debian.org/multimedia-team/liblc3
Bug#1007108: Fwd: ITP: qpwgraph -- User interface for controlling the PipeWire Graph
Hi Chris, Le sam. 12 mars 2022 à 11:39, Christopher Obbard a écrit : > > > - salsa-ci.yml is not needed anymore as we can directly use the config > > file from the salsa team: > >> https://salsa.debian.org/salsa-ci-team/pipeline/blob/master/README.md#basic-use > > Right, I initially used dh_make which generated that salsa-ci.yml file. > I've now removed it from the repo. > > Do you think it is worth opening a bug/merge request there to either > remove the generated file or add a comment about it not being needed any > more? This file can be useful is you want to custom the salsa pipeline, but keeping the default one is not needed. dh_make is doing the right thing by proposing a template of the pipeline config file. > > - Is there a specific reason to target the upstream dev website > > instead of the gitlab repo in the d/watch file? I guess he can forget > > to update it contrary to its gitlab repo. > > I did think about that, but most other packages I have seen target the > upstream's website in the watch file. > > For the record, the upstream tarball on the author's website doesn't > include the gitlab-ci file or some other bits, so they're not the same > archive as what you would download from gitlab. Okay it is up to you :-) Targeting github or gitlab is not a problem, a lot of packages do it. > > - The history of your master and upstream branches is uncommon, I > > think you cloned the upstream repo and then imported the upstream > > tarball with gbp? It would be cleaner to just create these branches > > using gbp import-orig. > > Right, I wanted to experiment with keeping the upstream git history > (like the pipewire packaging) rather than just importing all of the > files in a single commit like how import-orig would in the usual case. I > did that by: > > $ git init > $ git remote add upstream g...@gitlab.freedesktop.org:rncbc/qpwgraph.git > $ git checkout -b upstream v0.2.2 > $ gbp import-orig --upstream-vcs-tag v0.2.2 --pristine-tar > ../qpwgraph-0.2.2.tar.gz Both way are fine, it is up to the preferences of the maintainer or to the team policy. If you want to keep the upstream git history, you don't need to use gbp import-orig, this modifies the upstream branch and we should not do that :-). But, you can populate the pristine-tar branch with: $ pristine-tar commit ../qpwgraph-0.2.2.tar.gz I just sent the package to the NEW queue. Thanks for your work! Best, Dylan
Bug#1007108: Fwd: ITP: qpwgraph -- User interface for controlling the PipeWire Graph
Hi Chris, Thanks for your packaging! I had a look at it and of course it is good, nothing that could prevent me to upload it. Just to nitpick: - salsa-ci.yml is not needed anymore as we can directly use the config file from the salsa team: > https://salsa.debian.org/salsa-ci-team/pipeline/blob/master/README.md#basic-use - If you plan to maintain this package under the umbrella of the Debian Multimedia Team, you need to move the git repo under the team namespace and update the d/control fields accordingly. Just created a repo for you: > salsa.debian.org:multimedia-team/qpwgraph.git - Is there a specific reason to target the upstream dev website instead of the gitlab repo in the d/watch file? I guess he can forget to update it contrary to its gitlab repo. - The history of your master and upstream branches is uncommon, I think you cloned the upstream repo and then imported the upstream tarball with gbp? It would be cleaner to just create these branches using gbp import-orig. Best, Dylan
Bug#1007108: ITP: qpwgraph -- User interface for controlling the PipeWire Graph
Hi Christopher, If you need a sponsor for this package, you know how to ping me ;-) Best, Dylan
Bug#997001: ITP: pipewire-media-session -- PipeWire example session manager
Package: wnpp Owner: Dylan Aïssi Severity: wishlist Package name: pipewire-media-session URL: https://gitlab.freedesktop.org/pipewire/media-session/ License: MIT Description: PipeWire example session manager PipeWire Media Session is an example session manager for PipeWire. . Note that it is recommended the use of WirePlumber instead. It was previously part of pipewire package itself, but it moved to a separate module to accelerate its deprecation in favor of WirePlumber.
Bug#993237: ITP: svt-av1 -- Scalable Video Technology for AV1
Package: wnpp Severity: wishlist Owner: Dylan Aïssi X-Debbugs-Cc: debian-de...@lists.debian.org, debian-multime...@lists.debian.org * Package name: svt-av1 Version: 0.8.7 * URL : https://gitlab.com/AOMediaCodec/SVT-AV1/ * License : BSD-2-clause Description: Scalable Video Technology for AV1 (SVT-AV1 Encoder and Decoder) The Scalable Video Technology for AV1 (SVT-AV1 Encoder and Decoder) is an AV1-compliant encoder/decoder library core. The SVT-AV1 encoder development is a work-in-progress targeting performance levels applicable to both VOD and Live encoding / transcoding video applications. The SVT-AV1 decoder implementation is targeting future codec research activities. Remark: This package is maintained by Debian Multimedia Team at https://salsa.debian.org/multimedia-team/svt-av1
Bug#988689: ITP: 7zip -- 7-Zip file archiver
Hi Yokota, Le mar. 22 juin 2021 à 01:30, yokota a écrit : > > My changes are held on "experimental" branch. Please marge it. > Or, give me write permission to "master" branch. Because "master" > branch is protected and can only writable by project maintainer. > Check https://salsa.debian.org/help/user/project/protected_branches.md > for this issue. Thanks! I have merged your branch and granted you push permission to the master branch. I have reverted one of your commit [1], because pre-dependency should be discussed on debian-devel mailing list [2] and it is not used by 7zip. So, I don't want to introduce a pre-deps by mistake ;-) I just uploaded it to NEW. Feel free to ping me if you need to upload a new version of 7zip. And thanks again for your work on 7zip! Best, Dylan [1] https://salsa.debian.org/debian/7zip/-/commit/10f56c7a60c6e6e485ff9ed7b6e8704453bc7c98 [2] https://www.debian.org/doc/debian-policy/ch-relationships.html#binary-dependencies-depends-recommends-suggests-enhances-pre-depends
Bug#988689: ITP: 7zip -- 7-Zip file archiver
Hi, I started to work on 7zip [1] before realizing you already started a package of it. Are you still working on it? Should we combine our efforts to finish the package? Best, Dylan [1] https://salsa.debian.org/debian/7zip
Bug#989601: ITP: vulkan-volk -- Meta-loader for Vulkan API
Package: wnpp Owner: Dylan Aïssi Severity: wishlist Package name: vulkan-volk URL: https://github.com/zeux/volk License: MIT Description: Meta-loader for Vulkan API Volk allows you to dynamically load entrypoints required to use Vulkan without linking to vulkan-1.dll or statically linking Vulkan loader. Additionally, volk simplifies the use of Vulkan extensions by automatically loading all associated entrypoints. Finally, volk enables loading Vulkan entrypoints directly from the driver which can increase performance by skipping loader dispatch overhead.
Bug#989464: ITP: gfxreconstruct -- Improved version of LunarG's vktrace software
Package: wnpp Owner: Dylan Aïssi Severity: wishlist Package name: gfxreconstruct Upstream Author : LunarG URL: https://github.com/LunarG/gfxreconstruct License: MIT Description: Improved version of LunarG's vktrace software The primary goal for the GFXReconstruct project is to create an improved version of LunarG's vktrace software for capture and replay of Vulkan API calls. As development progresses, existing vktrace functionality such as trimming and client-server mode will be integrated with the GFXReconstruct codebase. When GFXReconstruct reaches feature parity with vktrace, vktrace will be deprecated in favor of GFXReconstruct.
Bug#973805: ITP: r-bioc-tcgabiolinksgui.data -- Data for the TCGAbiolinksGUI package
Package: wnpp Severity: wishlist Subject: ITP: r-bioc-tcgabiolinksgui.data -- Data for the TCGAbiolinksGUI package Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-bioc-tcgabiolinksgui.data Version : 1.10.0 Upstream Author : Tiago Chedraoui Silva * URL : https://bioconductor.org/packages/data/experiment/TCGAbiolinksGUI.data/ * License : GPL-3 Programming Lang: GNU R Description : Data for the TCGAbiolinksGUI package Supporting data for the TCGAbiolinksGUI package. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-bioc-tcgabiolinksgui.data
Bug#969943: ITP: r-cran-isospecr -- GNU R IsoSpec Algorithm
Package: wnpp Severity: wishlist Subject: ITP: r-cran-isospecr -- GNU R IsoSpec Algorithm Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-isospecr Version : 2.1.2 Upstream Author : Mateusz Krzysztof Lacki and Michal Startek * URL : https://cran.r-project.org/package=IsoSpecR * License : BSD-2-clause Programming Lang: GNU R Description : GNU R IsoSpec Algorithm IsoSpec is a fine structure calculator used for obtaining the most probable masses of a chemical compound given the frequencies of the composing isotopes and their masses. It finds the smallest set of isotopologues with a given probability. The probability is assumed to be that of the product of multinomial distributions, each corresponding to one particular element and parametrized by the frequencies of finding these elements in nature. These numbers are supplied by IUPAC - the International Union of Pure and Applied Chemistry. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-isospecr
Bug#967110: ITP: bpytop -- Resource monitor that shows usage and stats
Package: wnpp Severity: wishlist Subject: ITP: bpytop -- Resource monitor that shows usage and stats Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: bpytop Version : 1.0.2 Upstream Author : Aristocratos * URL : https://github.com/aristocratos/bpytop * License : Apache-2.0 Programming Lang: Python Description : Resource monitor that shows usage and stats Resource monitor that shows usage and stats for processor, memory, disks, network and processes. Python port of bashtop. Remark: This package is maintained at: https://salsa.debian.org/debian/bpytop
Bug#964191: RoSA ante portas - happily pass this on
Le sam. 4 juil. 2020 à 11:27, Andreas Tille a écrit : > > While I think your changes are pretty sensible it does not solve the > problem. > :-( I will investigate this again later today Dylan
Bug#964191: RoSA ante portas - happily pass this on
Hi Andreas, Le sam. 4 juil. 2020 à 09:43, Andreas Tille a écrit : > @Dylan: Any idea how to fix > > E: r-other-rosa: requires-r-api \o/ this tag is finally useful :-) I pushed a change that should fix this issue. I was not able to test because r-cran-lsd is not available (still in NEW). Could you try this change for me? Best, Dylan
Bug#916333: ITP: dav1d -- fast and small AV1 video stream decoder
Hi, Le jeu. 2 juil. 2020 à 10:34, Sebastian Ramacher a écrit : > > Did you try re-upload since the rejection? If not, why not? > > > > If that was the only reason given by ftpmasters for rejecting, then I > > would suggest to simply a) make sure that the licensing/patenting > > situation as you understand it is explicitly laid out in > > debian/copyright file, and then b) re-release the package. > > I'm not the maintainer, but it is currently in NEW with d/changelog > fixed. Yep, I fixed it with the help of James Cowgill (he maintains aom with the same patent license) and re-upload the new version in January (~ 2 weeks after the reject). > > > When re-uploaded, I can suggest to try nudge ftpmasters by logging into > > irc channel #debian-ftp and kindly request a review of the package. > > I've done that repeatedly without any progress. > I did not ping them about this package but if Sebastian already tried to do it without any success, I guess I will not have more luck. Since the version 0.7.0 (the last version in NEW queue), there is no longer any files with Alliance-for-Open-Media-Patent-License-1.0 in their header. This AOM-Patent-License-1.0 is only provided in doc/PATENTS, so maybe this will simplify the approval. Best, Dylan
Bug#916333: ITP: dav1d -- fast and small AV1 video stream decoder
Hi, (Please keep #916333 in CC ;-) Le jeu. 2 juil. 2020 à 09:44, Vasyl Gello a écrit : > So you have no objection against me doing a team upload and picking it for my > kodi work? > Jean-Batiste Kempf from VideoLAN also is very motivated to have dav1d in > Debian, so I will talk with Mattia & maybe even reach Joerg > on that matter. Feel free to do a team upload, but dav1d is still not in Debian and I don't know if it will be accepted one day... So, an upload now will have no real effect (at least for Debian). This situation is annoying because the reject was only about the AOM patent license but we already have the aom package in Debian with the same license. Best, Dylan
Bug#916333: ITP: dav1d -- fast and small AV1 video stream decoder
Hi Vasyl, On Tue, 30 Jun 2020 03:38:20 + Vasyl Gello wrote: > There is a new upstream release 0.7.1 for a week or so. > Can you please package it? dav1d is in the NEW queue since 1,5 years. It was rejected after 1 year in the NEW queue and I still don't have news about the last attempt. I am losing motivation for this package, I will probably convert this ITP to RFP... Best, Dylan
Bug#960375: ITP: r-cran-rstatix -- Pipe-Friendly Framework for Basic Statistical Tests
Package: wnpp Severity: wishlist Subject: ITP: r-cran-rstatix -- Pipe-Friendly Framework for Basic Statistical Tests Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-rstatix Version : 0.5.0 Upstream Author : Alboukadel Kassambara * URL : https://cran.r-project.org/package=rstatix * License : GPL-2 Programming Lang: GNU R Description : Pipe-Friendly Framework for Basic Statistical Tests Provides a simple and intuitive pipe-friendly framework, coherent with the 'tidyverse' design philosophy, for performing basic statistical tests, including t-test, Wilcoxon test, ANOVA, Kruskal-Wallis and correlation analyses. The output of each test is automatically transformed into a tidy data frame to facilitate visualization. Additional functions are available for reshaping, reordering, manipulating and visualizing correlation matrix. Functions are also included to facilitate the analysis of factorial experiments, including purely 'within-Ss' designs (repeated measures), purely 'between-Ss' designs, and mixed 'within-and-between-Ss' designs. It's also possible to compute several effect size metrics, including "eta squared" for ANOVA, "Cohen's d" for t-test and 'Cramer V' for the association between categorical variables. The package contains helper functions for identifying univariate and multivariate outliers, assessing normality and homogeneity of variances. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-rstatix
Bug#958702: bashtop
Hi Jonathan, The VCS fields on the ITP are wrong, the repo is there: > https://salsa.debian.org/debian/bashtop And bashtop (outdated) is in the NEW queue. > https://ftp-master.debian.org/new/bashtop_0.8.5-1.html Feel free to add yourself as comaintainer ;-) Best, Dylan
Bug#958702: ITP: bashtop -- Resource monitor that shows usage and stats
Package: wnpp Severity: wishlist Subject: ITP: bashtop -- Resource monitor that shows usage and stats Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: bashtop Version : 0.8.4 Upstream Author : Aristocratos * URL : https://github.com/aristocratos/bashtop * License : Apache-2.0 Programming Lang: (C, C++, C#, Perl, Python, etc.) Description : Resource monitor that shows usage and stats Resource monitor that shows usage and stats for processor, memory, disks, network and processes. Remark: This package is maintained by Dylan Aïssi at https://salsa.debian.org/daissi/bashtop
Bug#958309: ITP: r-bioc-bioccheck -- Bioconductor-specific package checks
Package: wnpp Severity: wishlist Subject: ITP: r-bioc-bioccheck -- Bioconductor-specific package checks Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-bioc-bioccheck Version : 1.22.0 Upstream Author : Copyright: (FIXME: year)-2019 Bioconductor Package Maintainer, * URL : https://bioconductor.org/packages/BiocCheck/ * License : Artistic-2.0 Programming Lang: GNU R Description : Bioconductor-specific package checks Executes Bioconductor-specific package checks. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-bioc-bioccheck
Bug#958308: ITP: r-bioc-biocviews -- Categorized views of R package repositories
Package: wnpp Severity: wishlist Subject: ITP: r-bioc-biocviews -- Categorized views of R package repositories Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-bioc-biocviews Version : 1.54.0 Upstream Author : Copyright: (FIXME: year)-2019 VJ Carey , * URL : https://bioconductor.org/packages/biocViews/ * License : Artistic-2.0 Programming Lang: GNU R Description : Categorized views of R package repositories Infrastructure to support 'views' used to classify Bioconductor packages. 'biocViews' are directed acyclic graphs of terms from a controlled vocabulary. There are three major classifications, corresponding to 'software', 'annotation', and 'experiment data' packages. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-bioc-biocviews
Bug#956716: ITP: r-cran-rematch2 -- Tidy Output from Regular Expression Matching
Package: wnpp Severity: wishlist Subject: ITP: r-cran-rematch2 -- Tidy Output from Regular Expression Matching Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-rematch2 Version : 2.1.1 Upstream Author : Mango Solutions, Gábor Csárdi, Matthew Lincoln * URL : https://cran.r-project.org/package=rematch2 * License : MIT Programming Lang: GNU R Description : Tidy Output from Regular Expression Matching Wrappers on 'regexpr' and 'gregexpr' to return the match results in tidy data frames. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-rematch2
Bug#955274: ITP: r-bioc-wrench -- GNU R wrench normalization for sparse count data
Package: wnpp Severity: wishlist Subject: ITP: r-bioc-wrench -- GNU R wrench normalization for sparse count data Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-bioc-wrench Version : 1.4.0 Upstream Author : Senthil Kumar Muthiah, * URL : https://bioconductor.org/packages/Wrench/ * License : Artistic-2.0 Programming Lang: GNU R Description : GNU R wrench normalization for sparse count data Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-bioc-wrench
Bug#954853: ITP: r-cran-isoband -- Generate Isolines and Isobands from Regularly Spaced Elevation
Package: wnpp Severity: wishlist Subject: ITP: r-cran-isoband -- Generate Isolines and Isobands from Regularly Spaced Elevation Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-isoband Version : 0.2.0 Upstream Author : Claus Wilke * URL : https://cran.r-project.org/package=isoband * License : MIT Programming Lang: GNU R Description : Generate Isolines and Isobands from Regularly Spaced Elevation Grids A fast C++ implementation to generate contour lines (isolines) and contour polygons (isobands) from regularly spaced grids containing elevation data. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-isoband
Bug#949465: ITP: r-cran-tinytest -- Lightweight and Feature Complete Unit Testing Framework
Package: wnpp Severity: wishlist Subject: ITP: r-cran-tinytest -- Lightweight and Feature Complete Unit Testing Framework Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-tinytest Version : 1.1.0 Upstream Author : Mark van der Loo * URL : https://cran.r-project.org/package=tinytest * License : GPL-3 Programming Lang: GNU R Description : Lightweight and Feature Complete Unit Testing Framework Provides a lightweight (zero-dependency) and easy to use unit testing framework. Main features: install tests with the package. Test results are treated as data that can be stored and manipulated. Test files are R scripts interspersed with test commands, that can be programmed over. Fully automated build-install-test sequence for packages. Skip tests when not run locally (e.g. on CRAN). Flexible and configurable output printing. Compare computed output with output stored with the package. Run tests in parallel. Extensible by other packages. Report side effects. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-tinytest
Bug#948654: ITP: thesias -- Testing Haplotype Effects In Association Studies
Package: wnpp Owner: Debian Med Packaging Team Severity: wishlist Package name: thesias Upstream Author : David-Alexandre Trégouët URL: https://github.com/daissi/thesias License: GPL-3+ Description: Testing Haplotype Effects In Association Studies The objectif of the THESIAS program is to performed haplotype-based association analysis in unrelated individuals. This program is based on the maximum likelihood model described in Tregouet et al. 2002 (Hum Mol Genet 2002,11: 2015-2023) and is linked to the SEM algorithm (Tregouet et al. Ann Hum Genet 2004,68: 165-177). THESIAS allows one to simultaneous estimate haplotype frequencies and their associate effects on the phenotype of interest. In this new THESIAS release, quantitative, qualitative (logistic and matched-pair analysis), categorical and survival outcomes can be studied. X-linked haplotype analysis is also feasible. Covariate-adjusted haplotype effects as well as haplotype x covariate interactions can also be investigated. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/thesias
Bug#916333: dav1d_0.5.2-1_amd64.changes REJECTED
Hi, Le mar. 31 déc. 2019 à 21:50, James Cowgill a écrit : > > The AOM patent license is not a copyright license but rather an > "optional extra" which grants users patent rights under some extra > conditions. You would usually use it along with an additional license to > cover all the copyright related parts which the DFSG is more concerned > about. > > In aom, I put the patent license in a "Comment" section at the top and > don't mention it in any "License" clauses which I think makes this > distinction between copyright and patent issues a bit clearer. Thanks James for this explanation! The files from the package dav1d which are "covered" by the "optional extra" AOM patent license have exactly the same header as these from the package aom. So, I will write the d/copyright file like you did for aom. I hope this will be fine. Best, Dylan
Bug#948005: ITP: --
Package: wnpp Severity: wishlist Subject: ITP: -- Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: Version : Upstream Author : * URL : * License : Programming Lang: (C, C++, C#, Perl, Python, etc.) Description : Remark: This package is maintained by at
Bug#948007: ITP: r-cran-modeldata -- Data Sets Used Useful for Modeling Packages
Package: wnpp Severity: wishlist Subject: ITP: r-cran-modeldata -- Data Sets Used Useful for Modeling Packages Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-modeldata Version : 0.0.1 Upstream Author : Max Kuhn, RStudio * URL : https://cran.r-project.org/package=modeldata * License : MIT Programming Lang: GNU R Description : Data Sets Used Useful for Modeling Packages Data sets used for demonstrating or testing model-related packages are contained in this package. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-modeldata
Bug#948006: ITP: r-cran-modeldata -- Data Sets Used Useful for Modeling Packages
Package: wnpp Severity: wishlist Subject: ITP: r-cran-modeldata -- Data Sets Used Useful for Modeling Packages Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-modeldata Version : 0.0.1 Upstream Author : Max Kuhn, RStudio * URL : https://cran.r-project.org/package=modeldata * License : MIT Programming Lang: GNU R Description : Data Sets Used Useful for Modeling Packages Data sets used for demonstrating or testing model-related packages are contained in this package. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-modeldata
Bug#916333: dav1d_0.5.2-1_amd64.changes REJECTED
Hi Thorsten, Thanks for your work as ftpmaster! Le ven. 27 déc. 2019 à 00:00, Thorsten Alteholz a écrit : > > the list of grants does not contain the right to modify and distribute the > modifications of files under the Alliance-for-Open-Media-Patent-License-1.0. > I am afraid that this is not compatible woth the DFSG. I have re-read the license and did not find the relevant part, could you tag the problematic part of the Alliance-for-Open-Media-Patent-License-1.0 ? In case of the Alliance-for-Open-Media-Patent-License-1.0 is not compatible with the DFSG, what should we do for packages in the Debian archive with the same license (aom) ? Similar question for packages with embedded dav1d (firefox) ? Best, Dylan
Bug#928309: ITP: android-file-transfer -- reliable MTP client with minimalistic UI
Package: wnpp Owner: Dylan Aïssi Severity: wishlist Package name: android-file-transfer Upstream Author : Vladimir Menshakov URL: https://github.com/whoozle/android-file-transfer-linux License: LGPL-2.1+ Description: reliable MTP client with minimalistic UI Android-File-Transfer is a reliable MTP client with minimalistic UI. Its features are: 1. Simple Qt UI with progress dialogs. 2. FUSE wrapper, supporting partial read/writes, allowing instant access to your files. 3. No file size limits. 4. Automatically renames album cover to make it visible from media player. 5. USB ‘Zerocopy’ support found in recent Linux kernel (no user/kernel data copying). 6. No extra dependencies (e.g. libptp/libmtp). 7. Available as static/shared library. 8. Command line tool (aft-mtp-cli).
Bug#926259: ITP: optimir -- Integrating genetic variations in miRNA alignment
Package: wnpp Owner: Debian Med Packaging Team Severity: wishlist Package name: optimir Upstream Author : Florian Thibord URL: https://github.com/FlorianThibord/OptimiR License: GPL-3 Description: Integrating genetic variations in miRNA alignment OptimiR is a miRSeq data alignment workflow. It integrates genetic information to assess the impact of variants on miRNA expression. . OptimiR: A bioinformatics pipeline designed to detect and quantify miRNAs, isomiRs and polymiRs from miRSeq data, & study the impact of genetic variations on polymiRs' expression. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/optimir
Bug#925500: ITP: shapeit4 -- fast and accurate method for estimation of haplotypes
Package: wnpp Owner: Debian Med Packaging Team Severity: wishlist Package name: shapeit4 Upstream Author : Olivier Delaneau URL: https://odelaneau.github.io/shapeit4/ License: Expat Description: fast and accurate method for estimation of haplotypes (phasing) Segmented HAPlotype Estimation and Imputation Tools version 4 (SHAPEIT4). SHAPEIT4 is a fast and accurate method for estimation of haplotypes (aka phasing) for SNP array and sequencing data. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/shapeit4
Bug#916333: ITP: dav1d -- fast and small AV1 video stream decoder
Package: wnpp Owner: Debian Multimedia Maintainers Severity: wishlist Package name: dav1d Version: 0.1.0 Upstream Author: VideoLan URL: https://code.videolan.org/videolan/dav1d License: BSD-2-clause Description: fast and small AV1 video stream decoder dav1d is an AOMedia Video 1 (AV1) cross-platform decoder and focused on speed and correctness. . dav1d supports the following features: * support for all features of the AV1 bitstream * support for all bitdepth, 8, 10 and 12bits * support for all chroma subsamplings 4:2:0, 4:2:2, 4:4:4 and grayscale * full acceleration for AVX-2 64bits processors * partial acceleration for SSSE3 processors * partial acceleration for NEON processors This package is maintained by Debian Multimedia Team at https://salsa.debian.org/multimedia-team/dav1d
Bug#915376: ITP: r-bioc-zlibbioc -- (Virtual) zlibbioc Bioconductor package
Package: wnpp Owner: Dylan Aïssi Severity: wishlist Package name: r-bioc-zlibbioc Version: 1.28.0 Upstream Author: Martin Morgan URL: https://bioconductor.org/packages/zlibbioc/ License: Artistic-2.0 Programming Lang: GNU R Description: (Virtual) zlibbioc Bioconductor package zlibbioc provides the zlib library to the Bioconductor environment. This is useless on Debian as we have a packaged zlib. So, to avoid to patch all Bioconductor packages which required zlibbioc, zlibbioc is packaged as an empty shell depending on zlib1g-dev (similar mechanism to r-cran-bh). This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-bioc-zlibbioc
Bug#914445: ITP: fastp -- Ultra-fast all-in-one FASTQ preprocessor
Package: wnpp Owner: Debian Med Packaging Team Severity: wishlist Package name: fastp Version: 0.19.5 Upstream Author : Shifu Chen URL: https://github.com/OpenGene/fastp License: MIT Description: Ultra-fast all-in-one FASTQ preprocessor All-in-one FASTQ preprocessor, fastp provides functions including quality profiling, adapter trimming, read filtering and base correction. It supports both single-end and paired-end short read data and also provides basic support for long-read data. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/fastp
Bug#912741: ITP: r-cran-biocmanager -- Access the Bioconductor Project Package Repository
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-biocmanager Version : 1.30.3 Upstream Author : Martin Morgan, Marcel Ramos * URL : https://cran.r-project.org/package=BiocManager * License : Artistic-2.0 Programming Lang: GNU R Description : Access the Bioconductor Project Package Repository A convenient tool to install and update Bioconductor packages. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-biocmanager
Bug#912728: ITP: r-cran-tidyverse -- Easily Install and Load the 'Tidyverse'
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-tidyverse Version : 1.2.1 Upstream Author : Hadley Wickham, RStudio * URL : https://cran.r-project.org/package=tidyverse * License : GPL-3 Programming Lang: GNU R Description : Easily Install and Load the 'Tidyverse' The 'tidyverse' is a set of packages that work in harmony because they share common data representations and 'API' design. This package is designed to make it easy to install and load multiple 'tidyverse' packages in a single step. Learn more about the 'tidyverse' at <https://tidyverse.org>. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-tidyverse
Bug#912716: ITP: r-cran-reprex -- Prepare Reproducible Example Code via the Clipboard
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-reprex Version : 0.2.1 Upstream Author : Jennifer Bryan, Jim Hester, David Robinson, Hadley Wickham, RStudio * URL : https://cran.r-project.org/package=reprex * License : MIT Programming Lang: GNU R Description : Prepare Reproducible Example Code via the Clipboard Convenience wrapper that uses the 'rmarkdown' package to render small snippets of code to target formats that include both code and output. The goal is to encourage the sharing of small, reproducible, and runnable examples on code-oriented websites, such as <https://stackoverflow.com> and <https://github.com>, or in email. The user's clipboard is the default source of input code and the default target for rendered output. 'reprex' also extracts clean, runnable R code from various common formats, such as copy/paste from an R session. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-reprex
Bug#912609: ITP: r-cran-rvest -- Easily Harvest (Scrape) Web Pages
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-rvest Version : 0.3.2 Upstream Author : Hadley Wickham, RStudio * URL : https://cran.r-project.org/package=rvest * License : GPL-3 Programming Lang: GNU R Description : Easily Harvest (Scrape) Web Pages Wrappers around the 'xml2' and 'httr' packages to make it easy to download, then manipulate, HTML and XML. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-rvest
Bug#912534: ITP: r-cran-selectr -- Translate CSS Selectors to XPath Expressions
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-selectr Version : 0.4 Upstream Author : Simon Potter, Simon Sapin, Ian Bicking * URL : https://cran.r-project.org/package=selectr * License : BSD-3-clause Programming Lang: GNU R Description : Translate CSS Selectors to XPath Expressions Translates a CSS3 selector into an equivalent XPath expression. This allows us to use CSS selectors when working with the XML package as it can only evaluate XPath expressions. Also provided are convenience functions useful for using CSS selectors on XML nodes. This package is a port of the Python package 'cssselect' (<https://cssselect.readthedocs.io/>). Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-selectr
Bug#912177: ITP: r-cran-rcmdcheck -- Run 'R CMD check' from 'R' and Capture Results
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-rcmdcheck Version : 1.3.0 Upstream Author : Mango Solutions, Gábor Csárdi, RStudio * URL : https://cran.r-project.org/package=rcmdcheck * License : MIT Programming Lang: GNU R Description : Run 'R CMD check' from 'R' and Capture Results Run 'R CMD check' from 'R' programmatically, and capture the results of the individual checks. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-rcmdcheck
Bug#912158: ITP: r-cran-remotes -- R Package Installation from Remote Repositories
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-remotes Version : 2.0.1 Upstream Author : Gábor Csárdi, * URL : https://cran.r-project.org/package=remotes * License : GPL-2+ Programming Lang: GNU R Description : R Package Installation from Remote Repositories, Including 'GitHub' Download and install R packages stored in 'GitHub', 'BitBucket', or plain 'subversion' or 'git' repositories. This package is a lightweight replacement of the 'install_*' functions in 'devtools'. Indeed most of the code was copied over from 'devtools'. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-remotes
Bug#912138: ITP: r-cran-sessioninfo -- R Session Information
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-sessioninfo Version : 1.1.0 Upstream Author : Gábor Csárdi, R core, Hadley Wickham, Winston Chang, Robert M Flight, Kirill Müller, Jim Hester * URL : https://cran.r-project.org/package=sessioninfo * License : GPL-2 Programming Lang: GNU R Description : R Session Information Query and print information about the current R session. It is similar to 'utils::sessionInfo()', but includes more information about packages, and where they were installed from. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-sessioninfo
Bug#911989: ITP: r-cran-usethis -- Automate Package and Project Setup
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-usethis Version : 1.4.0 Upstream Author : Hadley Wickham, Jennifer Bryan, RStudio * URL : https://cran.r-project.org/package=usethis * License : GPL-3 Programming Lang: GNU R Description : Automate Package and Project Setup Automate package and project setup tasks that are otherwise performed manually. This includes setting up unit testing, test coverage, continuous integration, Git, 'GitHub', licenses, 'Rcpp', 'RStudio' projects, and more. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-usethis
Bug#911984: ITP: r-cran-xopen -- Open System Files, 'URLs', Anything
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-xopen Version : 1.0.0 Upstream Author : Gábor Csárdi * URL : https://cran.r-project.org/package=xopen * License : MIT Programming Lang: GNU R Description : Open System Files, 'URLs', Anything Cross platform solution to open files, directories or 'URLs' with their associated programs. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-xopen
Bug#911982: ITP: r-cran-clisymbols -- Unicode Symbols at the R Prompt
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-clisymbols Version : 1.2.0 Upstream Author : Gábor Csárdi, Sindre Sorhus * URL : https://cran.r-project.org/package=clisymbols * License : MIT Programming Lang: GNU R Description : Unicode Symbols at the R Prompt A small subset of Unicode symbols, that are useful when building command line applications. They fall back to alternatives on terminals that do not support Unicode. Many symbols were taken from the 'figures' 'npm' package (see <https://github.com/sindresorhus/figures>). Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-clisymbols
Bug#911914: ITP: r-cran-clipr -- Read and Write from the System Clipboard
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-clipr Version : 0.4.1 Upstream Author : Matthew Lincoln, * URL : https://cran.r-project.org/package=clipr * License : GPL-3 Programming Lang: GNU R Description : Read and Write from the System Clipboard Simple utility functions to read from and write to the Windows, OS X, and X11 clipboards. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-clipr
Bug#911913: ITP: r-cran-gh -- Minimal client to access the 'GitHub' 'API'
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-gh Version : 1.0.1 Upstream Author : Gábor Csárdi * URL : https://cran.r-project.org/package=gh * License : MIT Programming Lang: GNU R Description : Minimal client to access the 'GitHub' 'API'. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-gh
Bug#911809: ITP: r-cran-ini -- Read and Write '.ini' Files
Package: wnpp Owner: Dylan Aïssi Severity: wishlist * Package name: r-cran-ini Version : 0.3.1 Upstream Author : David Valentim Dias * URL : https://cran.r-project.org/package=ini * License : GPL-3 Programming Lang: GNU R Description : Read and Write '.ini' Files Parse simple '.ini' configuration files to an structured list. Users can manipulate this resulting list with lapply() functions. This same structured list can be used to write back to file after modifications. Remark: This package is maintained by Debian R Packages Maintainers at https://salsa.debian.org/r-pkg-team/r-cran-ini
Bug#909334: ITP: openrazer -- OpenRazer peripheral drivers
Package: wnpp Severity: wishlist Owner: Dylan Aïssi Package name: openrazer URL: https://openrazer.github.io/ License: GPL-2+ Description: OpenRazer peripheral drivers OpenRazer is a collection of GNU/Linux drivers for the Razer devices. Supported devices include keyboards, mice, mouse-mats, headsets and various other devices. Current packaging take place at: https://salsa.debian.org/daissi-guest/openrazer
Bug#905164: ITP: r-cran-reticulate -- R interface to Python modules, classes, and functions
Package: wnpp Severity: wishlist Owner: Debian R Packages Maintainers Package name: r-cran-reticulate URL: https://cran.r-project.org/package=reticulate License: Apache-2.0 Description: R interface to Python modules, classes, and functions Interface to Python modules, classes, and functions. When calling into Python, R data types are automatically converted to their equivalent Python types. When values are returned from Python to R they are converted back to R types. The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-cran-reticulate.git
Bug#904835: ITP: r-cran-ranger -- Fast Implementation of Random Forests
Package: wnpp Severity: wishlist Owner: Debian R Packages Maintainers Package name: r-cran-ranger URL: https://cran.r-project.org/package=ranger License: GPL-3+ Description: Fast Implementation of Random Forests A fast implementation of Random Forests, particularly suited for high dimensional data. Ensembles of classification, regression, survival and probability prediction trees are supported. Data from genome-wide association studies can be analyzed efficiently. In addition to data frames, datasets of class 'gwaa.data' (R package 'GenABEL') and 'dgCMatrix' (R package 'Matrix') can be directly analyzed. The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-cran-ranger.git
Bug#903732: ITP: python-lzstring -- LZ-based compression algorithm
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: python-lzstring URL: https://pypi.org/project/lzstring/ License: Expat Description: LZ-based compression algorithm for Python python-lzstring is a simple Python module that compression data using LZ-based algorithm. This package is a dependency of MultiQC. It will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/python-lzstring/
Bug#903730: ITP: python-spectra -- Easy color scales and color conversion
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: python-spectra URL: https://pypi.org/project/spectra/ License: Expat Description: Easy color scales and color conversion for Python Spectra is a Python library that makes color math, color scales, and color-space conversion easy. Support for: Color scales, Color ranges, Color blending, Brightening/darkening colors, Saturating/desaturating colors, Conversion to/from multiple color spaces. This package is a dependency of MultiQC. It will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/python-spectra/
Bug#903728: ITP: python-colormath -- Abstracts common color math operations
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: python-colormath URL: https://pypi.org/project/colormath/ License: BSD-3-clause Description: Abstracts common color math operations python-colormath is a simple Python module that spares the user from directly dealing with color math. Some features include: Support for a wide range of color spaces. A good chunk of the CIE spaces, RGB, HSL/HSV, CMY/CMYK, and many more. Conversions between the various color spaces. For example, XYZ to sRGB, Spectral to XYZ, CIE Lab to Adobe RGB. Calculation of color difference. All CIE Delta E functions, plus CMC. Chromatic adaptations (changing illuminants). RGB to hex and vice-versa. 16-bit RGB support. This package is a dependency of MultiQC. It will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/python-colormath/
Bug#858947: Processed: retitle to RFP: plink2 -- whole-genome association analysis toolset
Hi Andreas, 2018-07-02 9:52 GMT+02:00 Andreas Tille : > I wonder whether plink2[1] will simply replace plink1.9 and this > RFP could be closed. Plink2 will not be compatible with plink1 and plink1.9, so for reproducibility and compatibility we need to keep them in Debian. I still plan to package plink2 but I am waiting for a more stable version to finish the package. I don't want to propose an alpha version, maybe I will wait at least until a beta version. Best, Dylan
Bug#901871: ITP: photoflare -- Simple but powerful Cross Platform Image Editor
Package: wnpp Severity: wishlist Owner: Dylan Aïssi Package name: photoflare URL: http://photoflare.io/ License: GPL-3+ Description: Simple but powerful Cross Platform Image Editor This is an effort to bring quick, simple but powerful image editing to the masses. PhotoFlare is inspired by the image editor currently only available on Microsoft Windows – PhotoFiltre. However, it will not be a straight clone. It is being built from the ground up to be much improved and cross platform too!
Bug#900765: ITP: libstatgen -- processing and analyzing next generation sequencing and genotyping data library
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: libstatgen URL: https://genome.sph.umich.edu/wiki/C++_Library:_libStatGen License: GPL-3+ Description: processing and analyzing next generation sequencing and genotyping data library libStatGen is a library for statistical genetic programs. It includes some: A. General Operation Classes including: File/Stream I/O, String processing and Parameter Parsing. B. Statistical Genetic Specific Classes including: Handling Common file formats (Accessors to get/set values, Indexed access to BAM files) and some utility classes, including: 1. Cigar: interpretation and mapping between query and reference. 2. Pileup: structured access to data by individual reference position. This library is a dependency of minimac4 (#900764). The package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/libstatgen/
Bug#900764: ITP: minimac4 -- Fast Imputation Based on State Space Reduction HMM
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: minimac4 URL: https://genome.sph.umich.edu/wiki/Minimac4 License: GPL-3 Description: Fast Imputation Based on State Space Reduction HMM Minimac4 is a lower memory and more computationally efficient implementation of "minimac2/3". It is an algorithm for genotypic imputation that works on phased genotypes (say from MaCH). . Minimac4 is designed to handle very large reference panels in a more computationally efficient way with no loss of accuracy. This algorithm analyzes only the unique sets of haplotypes in small genomic segments, thereby saving on time\-complexity, computational memory but no loss in degree of accuracy. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/minimac4
Bug#899401: ITP: r-cran-metamix -- GNU R bayesian mixture analysis for metagenomic community profiling
Package: wnpp Severity: wishlist Owner: Debian R Packages Maintainers Package name: r-cran-metamix URL: https://cran.r-project.org/package=metaMix License: GPL-3 Description: GNU R bayesian mixture analysis for metagenomic community profiling Resolves complex metagenomic mixtures by analysing deep sequencing data, using a mixture model based approach. The use of parallel Monte Carlo Markov chains for the exploration of the species space enables the identification of the set of species more likely to contribute to the mixture. This package will be maintained by the Debian R Packages Maintainers at: https://salsa.debian.org/r-pkg-team/r-cran-metamix
Bug#899400: ITP: bolt-lmm -- Efficient large cohorts genome-wide Bayesian mixed-model association testing
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: bolt-lmm URL: https://data.broadinstitute.org/alkesgroup/BOLT-LMM/ License: GPL-3+ Description: Efficient large cohorts genome-wide Bayesian mixed-model association testing The BOLT-LMM software package currently consists of two main algorithms, the BOLT-LMM algorithm for mixed model association testing, and the BOLT-REML algorithm for variance components analysis (i.e., partitioning of SNP-heritability and estimation of genetic correlations). This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/bolt-lmm
Bug#896142: ITP: ChromImpute -- Large-scale systematic epigenome imputation
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: chromimpute URL: http://www.biolchem.ucla.edu/labs/ernst/ChromImpute/ License: GPL-2 Description: Large-scale systematic epigenome imputation ChromImpute is software for large-scale systematic epigenome imputation. ChromImpute takes an existing compendium of epigenomic data and uses it to predict signal tracks for mark-sample combinations not experimentally mapped or to generate a potentially more robust version of data sets that have been mapped experimentally. ChromImpute bases its predictions on features from signal tracks of other marks that have been mapped in the target sample and the target mark in other samples with these features combined using an ensemble of regression trees. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/chromimpute.git/
Bug#893827: ITP: bioSyntax -- Syntax highlighting for computational biology
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: biosyntax URL: https://biosyntax.org/ License: GPL-3 Description: Syntax Highlighting for Computational Biology (gedit) Syntax highlighting for computational biology to bring you intuitively close to your data. BioSyntax supports .sam, .flagstat, .vcf, .fasta, .fastq, .faidx , .clustal, .pdb, .gtf, .bed files & more. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/biosyntax.git/
Bug#892284: ITP: ChromHMM -- Chromatin state discovery and characterization
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: chromhmm URL: http://compbio.mit.edu/ChromHMM/ License: GPL-3+ Description: Chromatin state discovery and characterization ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks. ChromHMM is based on a multivariate Hidden Markov Model that explicitly models the presence or absence of each chromatin mark. The resulting model can then be used to systematically annotate a genome in one or more cell types. By automatically computing state enrichments for large-scale functional and annotation datasets ChromHMM facilitates the biological characterization of each state. ChromHMM also produces files with genome-wide maps of chromatin state annotations that can be directly visualized in a genome browser. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/chromhmm.git/
Bug#892038: ITP: r-cran-ggsci -- Scientific Journal and Sci-Fi Themed Color Palettes
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team X-Debbugs-Cc: debia...@lists.debian.org Package name: r-cran-ggsci URL: https://cran.r-project.org/package=ggsci License: GPL-3 Description: Scientific Journal and Sci-Fi Themed Color Palettes A collection of 'ggplot2' color palettes inspired by plots in scientific journals, data visualization libraries, science fiction movies, and TV shows. The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-cran-ggsci.git
Bug#892039: ITP: r-cran-bigmemory -- Manage Massive Matrices with Shared Memory and Memory-Mapped Files
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team X-Debbugs-Cc: debia...@lists.debian.org Package name: r-cran-bigmemory URL: https://cran.r-project.org/package=bigmemory License: LGPL-3 or Apache-2 Description: Manage Massive Matrices with Shared Memory and Memory-Mapped Files Create, store, access, and manipulate massive matrices. Matrices are allocated to shared memory and may use memory-mapped files. Packages 'biganalytics', 'bigtabulate', 'synchronicity', and 'bigalgebra' provide advanced functionality. The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-cran-bigmemory.git
Bug#892040: ITP: r-cran-bigmemory.sri -- A shared resource interface for Bigmemory Project packages
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team X-Debbugs-Cc: debia...@lists.debian.org Package name: r-cran-bigmemory.sri URL: https://cran.r-project.org/package=bigmemory.sri License: LGPL-3 or Apache-2 Description: A shared resource interface for Bigmemory Project packages This package provides a shared resource interface for the bigmemory and synchronicity packages. The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-cran-bigmemory.sri.git
Bug#891808: ITP: r-bioc-impute -- Imputation for microarray data
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-bioc-impute URL: https://bioconductor.org/packages/impute/ License: GPL-2 Description: Imputation for microarray data R package which provide a function to perform imputation for microarray data (currently KNN only). The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-bioc-impute.git
Bug#891734: ITP: r-cran-gee -- Generalized Estimation Equation Solver
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-cran-gee URL: https://cran.r-project.org/package=gee License: GPL-2 Description: Generalized Estimation Equation Solver R package which provide a function to solve a Generalized Estimation Equation Model. The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-cran-gee.git
Bug#891476: ITP: r-cran-prettyr -- Pretty Descriptive Stats
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-cran-prettyr URL: https://cran.r-project.org/package=prettyR License: GPL-2+ Description: Pretty Descriptive Stats Functions for conventionally formatting descriptive stats, reshaping data frames and formatting R output as HTML. The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-cran-prettyr.git
Bug#891326: ITP: jheatchart -- Heat map charting library for Java
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: jheatchart URL: http://www.javaheatmap.com/ License: LGPL-3+ Description: Heat map charting library for Java The JHeatChart library provides a simple API for generating Java heat maps. Output heat maps as .png, .jpg or .gif images. Generate Image objects for further processing. Show generated Image in a Swing JPanel. Fully customisable colours, dimensions, fonts etc. Linear, logarithmic and exponential colour scales. This is a dependency of ChromHMM. This package will be maintained by the Debian Med Packaging Team at: https://salsa.debian.org/med-team/jheatchart.git
Bug#890971: ITP: r-cran-leaps -- Regression Subset Selection
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-cran-leaps URL: https://cran.r-project.org/package=leaps License: GPL-2+ Description: Regression Subset Selection Regression subset selection, including exhaustive search. This is a dependency of r-cran-factominer (#890969). The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-cran-leaps.git
Bug#890970: ITP: r-cran-flashclust -- Implementation of optimal hierarchical clustering
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-cran-flashclust URL: https://cran.r-project.org/package=flashClust License: GPL-2+ Description: Implementation of optimal hierarchical clustering Fast implementation of hierarchical clustering This is a dependency of r-cran-factominer (#890969). The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-cran-flashclust.git
Bug#890969: ITP: r-cran-factominer -- Multivariate Exploratory Data Analysis and Data Mining
Package: wnpp Severity: wishlist Owner: Debian Med Packaging Team Package name: r-cran-factominer URL: https://cran.r-project.org/package=FactoMineR License: GPL-2+ Description: Multivariate Exploratory Data Analysis and Data Mining Exploratory data analysis methods to summarize, visualize and describe datasets. The main principal component methods are available, those with the largest potential in terms of applications: principal component analysis (PCA) when variables are quantitative, correspondence analysis (CA) and multiple correspondence analysis (MCA) when variables are categorical, Multiple Factor Analysis when variables are structured in groups, etc. and hierarchical cluster analysis. The package will be maintained by the Debian R Packages Team at: https://salsa.debian.org/r-pkg-team/r-cran-factominer.git