Re: [O] R plots always exported to Rplots.pdf

[Greg Slodkowicz]

That solves it, many thanks!

- Greg


On Wed, May 22, 2013 at 2:38 PM, Jay Kerns  wrote:

> Hi Greg,
>
> On Wed, May 22, 2013 at 8:23 AM, Greg Slodkowicz  wrote:
>
> [snip]
>
> > This is what my code block looks like:
> >
> > #+NAME: pvals_waw
> > #+BEGIN_SRC R :file fig1.png :exports results
> > pvals = read.table("waw_data.txt", header=T)
> > plot(pvals$pvalue, pvals$length)
> > #+END_SRC
> >
>
> Have you tried (something like) this?
>
>  #+BEGIN_SRC R :exports results :results graphics :file fig1.png
>
> I hope this helps,
>
>
> --
> Jay
>



-- 
Greg Slodkowicz
PhD student, Nick Goldman group
EMBL-EBI

[O] R plots always exported to Rplots.pdf

[Greg Slodkowicz]

Hi,
I'm trying to generate a report with R plots using org-mode but no matter
what header arguments are you the generated files are always called
Rplots.pdf

This is what my code block looks like:

#+NAME: pvals_waw
#+BEGIN_SRC R :file fig1.png :exports results
pvals = read.table("waw_data.txt", header=T)
plot(pvals$pvalue, pvals$length)
#+END_SRC

after evaluating the code block I get

#+RESULTS: pvals_waw
[[file:fig1.png]]

but I can see that the plot is in Rplots.pdf so subsequent attempt to
export Latex/PDF fail.  I'm using org 20130522 and R 3.0.

Best,
Greg


-- 
Greg Slodkowicz
PhD student, Nick Goldman group
EMBL-EBI