Re: [gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4

2011-05-01 Thread Mark Abraham 

On 1/05/2011 11:48 PM, Faezeh Kargar wrote:


Thank you very much for your reply. could you please tell me if there 
is any way to solve this problem and restart running the code?




If my theory is right, keep using the same installation of GROMACS 4.5. 
Talk to whoever manages your system about what may have happened. I'm 
not going to keep re-iterating my guess or predicating further 
discussion upon it :-)


Mark


Karagr


> On 30/04/2011 11:37 PM, Faezeh Kargar wrote:
>>
>>
>> > On 4/30/2011 7:22 PM, Faezeh Kargar wrote:
>> >>
>> >> Dear gmx users,
>> >>
>> >> My code stops running because of electricity voltage oscillation. it
>> >> happened for several times and each time I restarted running my 
code.

>> >> but for this time with command
>> >>
>> >> mdrun -s topol.tpr -x
>> >> traj.part0002.part0003.part0004.part0004.part0005.xtc -cpi state.cpt
>> >> -e ener.part0002.part0003.part0004.part0004.part0005.edr -g
>> >> md.part0002.part0003.part0004.part0004.part0005.log &
>> >>
>> >> I used this command before without any error. but now I encountered
>> >> error like this:
>> >>
>> >>
>> >> Program mdrun, VERSION 4.0.7
>> >> Source
>> >> code file: checkpoint.c, line: 565
>> >>
>> >> Fatal error:
>> >> Attempting
>> >> to read a checkpoint file of version 12 with code of version 4
>> >>
>> >> I looked at the file "checkpoint.c". at first the version of
>> >> checkpoint file is 4 but I do not know how and why it changes.
>> >>
>> >
>> > The usual reason for this kind of error is that you're using an old
>> > version of GROMACS to access a file written by a new version. That's
>> not
>> > a good idea.
>> >
>> > Mark
>> >
>>
>> Thank you for your reply. I just use version 4.0.7 of GROMACS and all
>> of files are written by this version. as I said before, I could
>> restart running of my codes with this command without any problem.
>>
>
> Version 12 is that used in 4.5.x, so I think you are using that version.
> Someone may have changed the software and not told you about it (in
> which case, tell them to stop wasting people's time). Or you've migrated
> files from one place to another, or something similar.
>
> Mark
> --
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>
>


--
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Re: [gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4

2011-05-01 Thread Faezeh Kargar 




Thank you very
much for your reply. could you please tell me if there is any way to solve
this problem and restart running the code?
Karagr

>
On 30/04/2011 11:37 PM, Faezeh Kargar wrote:
>>
>>
>> > On 4/30/2011 7:22 PM, Faezeh Kargar
wrote:
>> >>
>> >> Dear gmx users,
>> >>
>> >> My code stops running because
of electricity voltage oscillation. it
>> >> happened for
several times and each time I restarted running my code.
>>
>> but for this time with command
>> >>
>> >> mdrun -s topol.tpr -x
>> >>
traj.part0002.part0003.part0004.part0004.part0005.xtc -cpi state.cpt
>> >> -e
ener.part0002.part0003.part0004.part0004.part0005.edr -g
>>
>> md.part0002.part0003.part0004.part0004.part0005.log &
>> >>
>> >> I used this command before
without any error. but now I encountered
>> >> error like
this:
>> >>
>> >>
>> >>
Program mdrun, VERSION 4.0.7
>> >> Source
>>
>> code file: checkpoint.c, line: 565
>> >>
>> >> Fatal error:
>> >> Attempting
>> >> to read a checkpoint file of version 12 with code of
version 4
>> >>
>> >> I looked at the
file "checkpoint.c". at first the version of
>>
>> checkpoint file is 4 but I do not know how and why it changes.
>> >>
>> >
>> > The usual reason
for this kind of error is that you're using an old
>> >
version of GROMACS to access a file written by a new version. That's
>> not
>> > a good idea.
>> >
>> > Mark
>> >
>>
>> Thank
you for your reply. I just use version 4.0.7 of GROMACS and all
>> of files are written by this version. as I said before, I
could
>> restart running of my codes with this command without
any problem.
>>
> 
> Version 12 is that used in
4.5.x, so I think you are using that version.
> Someone may have
changed the software and not told you about it (in
> which case,
tell them to stop wasting people's time). Or you've migrated
>
files from one place to another, or something similar.
> 
> Mark
> --
> gmx-users mailing list   
gmx-users@gromacs.org
>
http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please
search the archive at
>
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-requ...@gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> 
> --
> This message has been scanned for viruses
and
> dangerous content by MailScanner, and is
> believed
to be clean.
> 
> 


-- 
83_kargar

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Re: [gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4

2011-04-30 Thread Mark Abraham 

On 30/04/2011 11:37 PM, Faezeh Kargar wrote:



> On 4/30/2011 7:22 PM, Faezeh Kargar wrote:
>>
>> Dear gmx users,
>>
>> My code stops running because of electricity voltage oscillation. it
>> happened for several times and each time I restarted running my code.
>> but for this time with command
>>
>> mdrun -s topol.tpr -x
>> traj.part0002.part0003.part0004.part0004.part0005.xtc -cpi state.cpt
>> -e ener.part0002.part0003.part0004.part0004.part0005.edr -g
>> md.part0002.part0003.part0004.part0004.part0005.log &
>>
>> I used this command before without any error. but now I encountered
>> error like this:
>>
>>
>> Program mdrun, VERSION 4.0.7
>> Source
>> code file: checkpoint.c, line: 565
>>
>> Fatal error:
>> Attempting
>> to read a checkpoint file of version 12 with code of version 4
>>
>> I looked at the file "checkpoint.c". at first the version of
>> checkpoint file is 4 but I do not know how and why it changes.
>>
>
> The usual reason for this kind of error is that you're using an old
> version of GROMACS to access a file written by a new version. That's not
> a good idea.
>
> Mark
>

Thank you for your reply. I just use version 4.0.7 of GROMACS and all 
of files are written by this version. as I said before, I could 
restart running of my codes with this command without any problem.




Version 12 is that used in 4.5.x, so I think you are using that version. 
Someone may have changed the software and not told you about it (in 
which case, tell them to stop wasting people's time). Or you've migrated 
files from one place to another, or something similar.


Mark
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Re: [gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4

2011-04-30 Thread Faezeh Kargar 





> On
4/30/2011 7:22 PM, Faezeh Kargar wrote:
>>
>> Dear
gmx users,
>>
>> My code stops running because of 
electricity voltage oscillation. it
>> happened for several
times and each time I restarted running my code.
>> but for
this time with command
>>
>> mdrun -s topol.tpr
-x
>> traj.part0002.part0003.part0004.part0004.part0005.xtc
-cpi state.cpt
>> -e
ener.part0002.part0003.part0004.part0004.part0005.edr -g
>>
md.part0002.part0003.part0004.part0004.part0005.log &
>>
>> I used this command before without any error. but now I
encountered
>> error like this:
>>
>>
>> Program mdrun, VERSION 4.0.7
>> Source
>>
code file: checkpoint.c, line: 565
>>
>> Fatal
error:
>> Attempting
>> to read a checkpoint file of
version 12 with code of version 4
>>
>> I looked at
the file "checkpoint.c". at first the version of
>>
checkpoint file is 4 but I do not know how and why it changes.
>>
> 
> The usual reason for this kind of error is
that you're using an old
> version of GROMACS to access a file
written by a new version. That's not
> a good idea.
> 
> Mark
>
Thank you for your reply. I just use version
4.0.7 of GROMACS and all of files are written by this version. as I said
before, I could restart running of my codes with this command without any
problem.
Thank you
> 
> 
> --
>
gmx-users mailing listgmx-users@gromacs.org
>
http://lists.gromacs.org/mailman/listinfo/gmx-users
> Please
search the archive at
>
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
> Please don't post (un)subscribe requests to the list. Use the
> www interface or send it to gmx-users-requ...@gromacs.org.
> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
> 
> --
> This message has been scanned for viruses
and
> dangerous content by MailScanner, and is
> believed
to be clean.
> 
> 


-- 
83_kargar

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Re: [gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4

2011-04-30 Thread Mark Abraham 

On 4/30/2011 7:22 PM, Faezeh Kargar wrote:


Dear gmx users,

My code stops running because of  electricity voltage oscillation. it 
happened for several times and each time I restarted running my code. 
but for this time with command


mdrun -s topol.tpr -x 
traj.part0002.part0003.part0004.part0004.part0005.xtc -cpi state.cpt 
-e ener.part0002.part0003.part0004.part0004.part0005.edr -g 
md.part0002.part0003.part0004.part0004.part0005.log &


I used this command before without any error. but now I encountered 
error like this:



Program mdrun, VERSION 4.0.7
Source
code file: checkpoint.c, line: 565

Fatal error:
Attempting
to read a checkpoint file of version 12 with code of version 4

I looked at the file "checkpoint.c". at first the version of 
checkpoint file is 4 but I do not know how and why it changes.




The usual reason for this kind of error is that you're using an old 
version of GROMACS to access a file written by a new version. That's not 
a good idea.


Mark



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[gmx-users] Fatal error: Attempting to read a checkpoint file of version 12 with code of version 4

2011-04-30 Thread Faezeh Kargar 
×M5~Ë­­ªyïxã]¹ß]7ãMuÓ
Program mdrun, VERSION 4.0.7Source
code file: checkpoint.c, line: 565Fatal error:Attempting
to read a checkpoint file of version 12 with code of version 4-- 83_kargar-- 
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